6EEN

Crystal structure of a designer Pentatrico Peptide RNA binding protein, bound to a complex RNA target and featuring an infinite superhelix and microheterogeneity.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.186 

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Literature

Crystal structure of a designer Pentatrico Peptide RNA binding protein, bound to a complex RNA target and featuring an infinite superhelix and microheterogeneity.

Schmidberger, J.W.Bond, C.S.

To be published.

Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Designer Pentatricopeptide Protein dPPR10A315Zea maysMutation(s): 0 
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Designer Pentatricopeptide Protein dPPR10B315Zea maysMutation(s): 0 
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Designer Pentatricopeptide Protein dPPR10C315Zea maysMutation(s): 0 
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Designer Pentatricopeptide Protein dPPR10D315Zea maysMutation(s): 0 
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
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  • Reference Sequence

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Entity ID: 5
MoleculeChainsLengthOrganismImage
RNA (5'-R(P*GP*GP*GP*GP*GP*GP*GP*GP*G)-3')E [auth F]9Zea mays
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Entity ID: 6
MoleculeChainsLengthOrganismImage
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')F [auth G]9Zea mays
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Entity ID: 7
MoleculeChainsLengthOrganismImage
RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')G [auth H]9Zea mays
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Entity ID: 8
MoleculeChainsLengthOrganismImage
RNA (5'-R(P*CP*CP*CP*CP*CP*CP*CP*CP*C)-3')H [auth I]9Zea mays
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.186 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.347α = 118.12
b = 51.647β = 97.21
c = 51.972γ = 96
Software Package:
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Australian Research Council (ARC)Australia--

Revision History  (Full details and data files)

  • Version 1.0: 2019-08-21
    Type: Initial release
  • Version 1.1: 2020-01-01
    Changes: Author supporting evidence