6EA7

Structure of EBOV GPcl in complex with the pan-ebolavirus mAb ADI-15878


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.25 Å
  • R-Value Free: 0.324 
  • R-Value Work: 0.280 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural Basis of Pan-Ebolavirus Neutralization by a Human Antibody against a Conserved, yet Cryptic Epitope.

West, B.R.Moyer, C.L.King, L.B.Fusco, M.L.Milligan, J.C.Hui, S.Saphire, E.O.

(2018) MBio 9: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Envelope glycoprotein
A, C, E
163Zaire ebolavirus (strain Kikwit-95)Mutation(s): 0 
Gene Names: GP
Find proteins for P87666 (Zaire ebolavirus (strain Kikwit-95))
Go to UniProtKB:  P87666
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Envelope glycoprotein
B, D, F
111Zaire ebolavirus (strain Gabon-94)Mutation(s): 0 
Gene Names: GP
Find proteins for O11457 (Zaire ebolavirus (strain Gabon-94))
Go to UniProtKB:  O11457
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
ADI-15878 Fab Heavy Chain
H, M, Q
233N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
ADI-15878 Fab Light Chain
L, N, R
213N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MAN
Query on MAN

Download SDF File 
Download CCD File 
B, D, F
ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
 Ligand Interaction
FUC
Query on FUC

Download SDF File 
Download CCD File 
A
ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
 Ligand Interaction
GAL
Query on GAL

Download SDF File 
Download CCD File 
B, D
BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
 Ligand Interaction
BMA
Query on BMA

Download SDF File 
Download CCD File 
B, D, F
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C, D, E, F
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.25 Å
  • R-Value Free: 0.324 
  • R-Value Work: 0.280 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 152.781α = 90.00
b = 152.781β = 90.00
c = 247.685γ = 120.00
Software Package:
Software NamePurpose
MOLREPphasing
Aimlessdata scaling
PHENIXrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesU19 AI109762
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesR01 AI132204

Revision History 

  • Version 1.0: 2018-09-19
    Type: Initial release
  • Version 1.1: 2018-09-26
    Type: Data collection, Database references, Source and taxonomy