6E8C

Crystal structure of the double homeodomain of DUX4 in complex with DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.198 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structure of the Double Homeodomain of DUX4 in Complex with DNA.

Lee, J.K.Bosnakovski, D.Toso, E.A.Dinh, T.Banerjee, S.Bohl, T.E.Shi, K.Orellana, K.Kyba, M.Aihara, H.

(2018) Cell Rep 25: 2955-2962.e3


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Double homeobox protein 4
A
141Homo sapiensMutation(s): 0 
Gene Names: DUX4 (DUX10)
Find proteins for Q9UBX2 (Homo sapiens)
Go to Gene View: DUX4
Go to UniProtKB:  Q9UBX2
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*GP*CP*GP*TP*AP*AP*TP*CP*TP*AP*AP*TP*CP*AP*AP*CP*A)-3')B17Homo sapiens
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(*TP*GP*TP*TP*GP*AP*TP*TP*AP*GP*AP*TP*TP*AP*CP*GP*C)-3')C17Homo sapiens
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CME
Query on CME
A
L-PEPTIDE LINKINGC5 H11 N O3 S2CYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.198 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 67.190α = 90.00
b = 73.140β = 90.00
c = 108.560γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
PHENIXrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM118047
National Institutes of Health/National Institute of Arthritis and Musculoskeletal and Skin DiseasesUnited StatesAR055685

Revision History 

  • Version 1.0: 2018-12-26
    Type: Initial release