6E5X

Crystal structure of Ebola virus VP30 C-terminus/RBBP6 peptide complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Protein Interaction Mapping Identifies RBBP6 as a Negative Regulator of Ebola Virus Replication.

Batra, J.Hultquist, J.F.Liu, D.Shtanko, O.Von Dollen, J.Satkamp, L.Jang, G.M.Luthra, P.Schwarz, T.M.Small, G.I.Arnett, E.Anantpadma, M.Reyes, A.Leung, D.W.Kaake, R.Haas, P.Schmidt, C.B.Schlesinger, L.S.LaCount, D.J.Davey, R.A.Amarasinghe, G.K.Basler, C.F.Krogan, N.J.

(2018) Cell 175: 1917-1930.e13

  • DOI: 10.1016/j.cell.2018.08.044

  • PubMed Abstract: 
  • Ebola virus (EBOV) infection often results in fatal illness in humans, yet little is known about how EBOV usurps host pathways during infection. To address this, we used affinity tag-purification mass spectrometry (AP-MS) to generate an EBOV-host pro ...

    Ebola virus (EBOV) infection often results in fatal illness in humans, yet little is known about how EBOV usurps host pathways during infection. To address this, we used affinity tag-purification mass spectrometry (AP-MS) to generate an EBOV-host protein-protein interaction (PPI) map. We uncovered 194 high-confidence EBOV-human PPIs, including one between the viral transcription regulator VP30 and the host ubiquitin ligase RBBP6. Domain mapping identified a 23 amino acid region within RBBP6 that binds to VP30. A crystal structure of the VP30-RBBP6 peptide complex revealed that RBBP6 mimics the viral nucleoprotein (NP) binding to the same interface of VP30. Knockdown of endogenous RBBP6 stimulated viral transcription and increased EBOV replication, whereas overexpression of either RBBP6 or the peptide strongly inhibited both. These results demonstrate the therapeutic potential of biologics that target this interface and identify additional PPIs that may be leveraged for novel therapeutic strategies.


    Organizational Affiliation

    High Magnetic Field Laboratory, Chinese Academy of Sciences, Hefei, China.,Genetics, Genomics and Bioinformatics Program, The Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, USA.,Protein Structure Laboratory, The University of Kansas, Kansas.,Department of Biophysics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, 100191, China; Institute of Systems Biomedicine, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, 100191, China.,State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Department of Physiology and Biophysics, School of Life Sciences, Fudan University, Shanghai 200433, China.,Biomedical Center and Center for Integrated Protein Science, Ludwig-Maximilians-University, 82152 Martinsried, Germany.,Center for Microbial Pathogenesis, Institute for Biomedical Sciences, Georgia State University, Atlanta, GA 30303, USA. Electronic address: cbasler@gsu.edu.,Institut de Biologie Intégrative de la Cellule (I2BC), IBITECS, CEA, CNRS, Université Paris-Saclay, Gif-sur-Yvette, France.,Department of Pharmacology, University of Colorado School of Medicine, Aurora, CO 80045, USA.,Department of Biochemistry & Molecular Biology, The University of Georgia, Athens, Georgia, 30602, USA.,Chemistry Department, Faculty of Science, Suez Canal University, 41522, Ismailia, Egypt.,Chemical Biology Program , Memorial Sloan Kettering Cancer Center , New York , New York 10065 , United States.,Oxford Protein Production Facility UK, Rutherford Appleton Laboratory, Oxfordshire, UK.,Science for Life Laboratory, Stockholm University, Solna, Sweden.,Department of Optoelectronic Information, School of Science, Qilu University of Technology, Jinan, China.,Department of Biochemistry and Molecular Biology, Nihon University School of Dentistry at Matsudo, Matsudo, Chiba, 271-8587, Japan.,Department of Genetics and Complex Diseases, Harvard T.H. Chan School of Public Health, Boston, MA, 02115, USA.,Cleveland Center for Membrane and Structural Biology, Case Western Reserve University, 1819 E 101st Street, Cleveland, OH, 44106, USA. pdk7@case.edu.,Biotechnology Research Division, Korea Atomic Energy Research Institute, Jeongeup, 56212, Republic of Korea; Department of Radiation Science and Technology, University of Science and Technology, Daejeon, 34113, Republic of Korea. Electronic address: mkkim@kaeri.re.kr.,Departments of Biological Chemistry and Chemistry and Biochemistry, Howard Hughes Medical Institute, UCLA-DOE Institute, UCLA, Los Angeles, CA, 90095, USA. david@mbi.ucla.edu.,National Laboratory for Physical Science at Microscale, School of Life Science, University of Science and Technology of China, Hefei, China.,Structural Biology & Bio-Informatics Division, CSIR-Indian Institute of Chemical Biology, 4, Raja S.C. Mullick Road, Kolkata 700 032, India.,Apoptosis and Proliferation Control Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.,BioMS - Swedish National Infrastructure for Biological Mass Spectrometry, Lund University, BMC D1330, 221 84 Lund, Sweden.,Peptide Chemistry Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.,CeSI-MeT, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy.,Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology, Department of Biology, 455 Main Street, Cambridge, Massachusetts 02142, USA.,Plant Biochemistry, Faculty of Biology & Biotechnology, Ruhr University Bochum, Bochum, Germany.,Department of Chemistry, Princeton University, Princeton, NJ 08544.,Center for Microbial Pathogenesis, Institute for Biomedical Sciences, Georgia State University, Atlanta, GA 30303, USA.,Core Research for Evolutional Science and Technology (CREST), Japan Science and Technology Agency (JST), Saitama, Japan. gkurisu@protein.osaka-u.ac.jp.,Howard Hughes Medical Institute, Janelia Research Campus, 19700 Helix Drive, Ashburn, Virginia 20147, USA.,From the Department of Neurology and Neurosurgery, Montreal Neurological Institute, McGill University, Montreal, Quebec H3A 2B4, Canada and.,Department of Chemistry, University of Florence, Via della Lastruccia 3, 50019, Sesto Fiorentino, Italy.,Graduate School of Medical Life Science, Yokohama City University, Yokohama, Japan.,Department of Biochemistry & Molecular Biology, The University of Georgia, Athens, Georgia, 30602, USA. jprose@uga.edu.,Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology, Dortmund, Germany. stefan.raunser@mpi-dortmund.mpg.de.,Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.,Department of Biology, Institute of Molecular Systems Biology, ETH Zürich, 8093, Zürich, Switzerland.,Biotechnology Research Division, Korea Atomic Energy Research Institute, Jeongeup, 56212, Republic of Korea; Department of Biotechnology and Bioengineering, Interdisciplinary Program for Bioenergy and Biomaterials, Chonnam National University, Gwangju, 61186, Republic of Korea.,From the Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QW, United Kingdom mw240@cam.ac.uk.,Institute of Protein Biochemistry, Ulm University, 89081, Ulm, Germany.,Department of Diagnostic Medicine & Pathobiology, College of Veterinary Medicine, Kansas State University, Kansas.,Institute of Systems Biomedicine, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, 100191, China.,Belfer Center for Applied Cancer Science, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.,Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 250 Longwood Avenue, Boston, MA 02115, USA. harrison@crystal.harvard.edu.,Chemistry and Biochemistry Department, University of Arizona, 1041 E. Lowell Street, Biosciences West, 517, Tucson, AZ, 85721, USA.,Howard Hughes Medical Institute, Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.,Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, CA 94158, USA; J. David Gladstone Institutes, San Francisco, CA 94158, USA; Division of Infectious Diseases, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.,Department of Biochemistry and Biophysics, Stockholm University, 106 91, Stockholm, Sweden. hogbom@dbb.su.se.,Texas Biomedical Research Institute, San Antonio, TX 78245, USA.,Department of Immunology, Genetics, and Pathology, Uppsala University, Uppsala, SE-751 85, Sweden.,Witebsky Center for Microbial Pathogenesis and Immunology, The Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, USA.,School of Chemical, Materials and Biomedical Engineering, College of Engineering, The University of Georgia, Athens, GA, 30602, USA.,Department of Biochemistry and Structural Biology, University of Texas Health Science Center, San Antonio, TX 78229; clarkn@uthscsa.edu fitzpatrickp@uthscsa.edu masad.damha@mcgill.ca pjh@biochem.uthscsa.edu.,Department of Chemistry, Wichita State University, Kansas.,Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, USA.,X-ray Crystallography Core Laboratory, University of Texas Health Science Center, San Antonio, TX 78229.,Diamond Light Source, Didcot, UK. dave@strubi.ox.ac.uk.,Materials and Structural Analysis, Thermo Fisher Scientific, Eindhoven, the Netherlands.,Eli Lilly and Company, Indianapolis, Indiana.,Institute for Biological and Medical Engineering, Schools of Engineering, Medicine, and Biological Sciences, Pontificia Universidad Católica de Chile, Santiago, Chile.,Section on Biological Chemistry, NIDCR, National Institutes of Health, 30 Convent Drive, Bethesda, MD, 20892-4370, USA.,Multidiscipline Research Center, Institute of High Energy Physics Chinese Academy of Sciences, Beijing, China.,Department of Discovery Chemistry, Bristol-Myers Squibb Co., Princeton, NJ 08543.,Department of Pediatric Dentistry, Nagasaki University Graduate School of Biomedical Sciences, Nagasaki, Nagasaki, 852-8588, Japan.,Department of Biochemistry , University of Bayreuth , 95447 Bayreuth , Germany.,Department of Neurology, David Geffen School of Medicine, UCLA, Los Angeles, CA, 90095, USA.,Magnetic Resonance Center (CERM), University of Florence and Consorzio Interuniversitario Risonanze Magnetiche di, Metallo Proteine (CIRMMP), Via L. Sacconi 6, 50019, Sesto Fiorentino, Italy.,National Synchrotron Light Source-II, Brookhaven National Laboratory, Upton, NY, 11973, USA.,Department of Biochemistry and Biophysics, Stockholm University, 106 91, Stockholm, Sweden. julia.griese@icm.uu.se.,IGF, University of Montpellier, CNRS, INSERM, Montpellier, 34094, France.,Hefei National Laboratory for Physical Sciences at Microscale CAS Center for Excellence in Biomacromolecules, Collaborative Innovation Center of Chemistry for Life Sciences, and School of Life Sciences , University of Science and Technology of China , 96 Jinzhai Road , Hefei , Anhui 230026 , China.,CBS, University of Montpellier, CNRS, INSERM, Montpellier, 34090, France.,CNR Istituto di Biostrutture e Bioimmagini, Via Mezzocannone 16, I-80134 Napoli, Italy. Electronic address: luigi.vitagliano@unina.it.,Graduate School of Medicine , University of Wollongong , Wollongong , NSW 2522 , Australia.,Research Service, Louis Stokes Cleveland VA Medical Center, 10701 East Boulevard, Cleveland, OH, 44106, USA. pdk7@case.edu.,Department of Biochemistry and Biophysics, Stockholm University, 106 91, Stockholm, Sweden.,The Microbiology Group, Department of Biology, Lund University, Sölvegatan 35, 223 62 Lund, Sweden; Department of Biophysics, Faculty of Science, Cairo University, 12316 Cairo, Egypt.,Eli Lilly and Company, Advanced Photon Source, Argonne National Laboratory, Argonne, Illinois.,Key Laboratory of RNA Biology, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.,IGF, University of Montpellier, CNRS, INSERM, Montpellier, 34094, France. sebastien.granier@igf.cnrs.fr.,California Nano Systems Institute, UCLA, Los Angeles, CA, 90095, USA.,Leads Discovery and Optimization, Bristol-Myers Squibb Co., Princeton, NJ 08543.,Broad Institute of Harvard and Massachusetts Institute of Technology, 7 Cambridge Center, Cambridge, Massachusetts 02142, USA.,Department of Microbiology, University of Illinois, Urbana, IL 61801, USA.,Institute of Molecular Biology and Pathology, CNR, Rome, Italy.,Department of Pharmacology, University of Colorado School of Medicine, Aurora, CO 80045, USA. Electronic address: tatiana.kutateladze@ucdenver.edu.,Department of Enzymology, Institute of Biochemistry and Biotechnology , Martin-Luther-University Halle-Wittenberg , 06120 Halle/Saale , Germany.,Department of Biochemistry, Ludwig-Maximilians-Universität München, Munich, Germany. hopfner@genzentrum.lmu.de.,Pancreatic Research Group, South Western Sydney Clinical School , University of New South Wales, and Ingham Institute for Applied Medical Research , Liverpool , NSW 2170 , Australia.,Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, CA 94158, USA; J. David Gladstone Institutes, San Francisco, CA 94158, USA.,Departments of Biochemistry and Biomolecular Chemistry, University of Wisconsin, Madison, WI 53706.,From the Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QW, United Kingdom.,CNR Istituto di Biostrutture e Bioimmagini, Via Mezzocannone 16, I-80134 Napoli, Italy. Electronic address: luciana.esposito@cnr.it.,Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63105, USA.,Department of Biochemistry, Ludwig-Maximilians-Universität München, Munich, Germany.,School of Chemistry, University of Nottingham, Nottingham, United Kingdom.,Macromolecular Crystallography, Swiss Light Source, Paul Scherrer Institut, 5232, Villigen PSI, Switzerland.,Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL) Heidelberg, 69117 Heidelberg, Germany.,Institute of Molecular Biology and Department of Chemistry and Biochemistry, University of Oregon, Eugene, OR, USA bnolen@uoregon.edu.,State Key Laboratory of Membrane Biology, Tsinghua University, Beijing 100084, China.,Key Laboratory of Structural Biology , Chinese Academy of Sciences , Hefei , Anhui 230026 , China.,School of Chemical, Materials and Biomedical Engineering, College of Engineering, The University of Georgia, Athens, GA, 30602, USA. yajunyan@uga.edu.,Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, CA 94158, USA; J. David Gladstone Institutes, San Francisco, CA 94158, USA. Electronic address: nevan.krogan@ucsf.edu.,Institute of Molecular Biology and Department of Chemistry and Biochemistry, University of Oregon, Eugene, OR, USA.,Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.,Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, 100871, China; Institute of Systems Biomedicine, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, 100191, China; Department of Pathology, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, 100191, China. Electronic address: yinyuxin@hsc.pku.edu.cn.,Laboratory of Applied Structural Biology, Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Uji, Kyoto 611-0011, Japan.,Biotechnology Research Division, Korea Atomic Energy Research Institute, Jeongeup, 56212, Republic of Korea; Department of Radiation Science and Technology, University of Science and Technology, Daejeon, 34113, Republic of Korea.,Institute of Protein Biochemistry, Ulm University, 89081, Ulm, Germany. marcus.faendrich@uni-ulm.de.,Institute for Cellular and Molecular Biology, The University of Texas, Austin, TX 78712.,Department of Microbiology and Oral Infection, Nagasaki University Graduate School of Biomedical Sciences, Nagasaki, Nagasaki, 852-8588, Japan.,Beijing Advanced Innovation Center for Structural Biology, Tsinghua University, Beijing 100084, China.,Center for Proteomics and Bioinformatics, Center for Synchrotron Biosciences, School of Medicine, Case Western Reserve University, 10900 Euclid Ave., Cleveland, OH, 44106-4988, USA.,Department of Cellular Biochemistry, Max Planck Institute of Biochemistry, Martinsried, Germany.,Eli Lilly and Company, Indianapolis, Indiana. buchananse@lilly.com.,Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.,Genomics Institute of the Novartis Research Foundation, San Diego, California 92121, USA.,Department of Biophysics, All India Institute of Medical Sciences, New Delhi, India. Electronic address: tpsingh.aiims@gmail.com.,NanoTemper Technologies GmbH, Floessergasse 4, Munich, 81369, Germany.,Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology, Dortmund, Germany.,Department of Cell and Molecular Biology, Uppsala University, 751 24, Uppsala, Sweden. julia.griese@icm.uu.se.,Gene Center, Ludwig-Maximilians-Universität München, Munich, Germany.,Gene Center, Ludwig-Maximilians-Universität München, Munich, Germany. hopfner@genzentrum.lmu.de.,Department of Biochemistry, McGill University, Montreal, QC, Canada.,Department of Biochemistry & Molecular Biology, Colorado State University , 1870 Campus Delivery, Fort Collins, Colorado 80523-1870, United States.,Institute of Biochemistry and Biotechnology, Martin-Luther-University, 06120, Halle (Saale), Germany.,Dipartimento di Scienze Chimiche, Università degli Studi di Napoli "Federico II", Via Cintia, I-80126 Napoli, Italy. Electronic address: delia.picone@unina.it.,School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.,Department of Molecular Biology and Biochemistry, University of California, 530A Steinhaus Hall, Irvine, CA 92697-3900, USA.,Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 250 Longwood Avenue, Boston, MA 02115, USA.,Apoptosis and Proliferation Control Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK. nic.tapon@crick.ac.uk.,Department of Macromolecular Science, Graduate School of Science, Osaka, Japan.,Department of Physics, Faculty of Science, Gakushuin University, Toshima-ku, Tokyo, 171-8588, Japan.,National Joint Biomedical Engineering Research Centre on Photodynamic Technologies , Fuzhou University , Fujian 350116 , China.,Department of Microbiology and Immunology , University of Otago , Otago 9016 , New Zealand.,Dipartimento di Scienze Chimiche, della Vita, della Sostenibilità Ambientale, Università Di Parma, Parco Area delle Scienze 17/A, 43124 Parma, Italy.,GlaxoSmithKline, Collegeville Road, Collegeville, Pennsylvania 19426, United States.,Center for Integrated Protein Science, Munich, Germany. hopfner@genzentrum.lmu.de.,Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences and School of Medicine, Tsinghua University, Beijing 100084, China.,Beijing Advanced Innovation Center for Soft Matter Science and Engineering, Beijing University of Chemical Technology, Beijing, 100029, China.,Eli Lilly and Company, Alexandria Center for Life Sciences, New York, New York.,Department of Chemistry, Princeton University, Princeton, NJ 08544; jtgroves@princeton.edu.,Max Planck Institute of Biochemistry, Martinsried, Germany.,Structural Biology - Science Technology Platform, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK. stephane.mouilleron@crick.ac.uk.,Lowe Center for Thoracic Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.,State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing, 100029, China.,Department of Medical, Oral and Biotechnological Sciences, "G. d'Annunzio" University of Chieti-Pescara, Chieti, Italy.,Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, IN 47907, USA.,Core Research for Evolutional Science and Technology (CREST), Japan Science and Technology Agency (JST), Saitama, Japan.,Departamento de Bioquímica y Biología Estructural, Instituto de Fisiología Celular, Universidad Nacional Autónoma de México, Circuito Exterior s/n, Ciudad Universitaria, Apartado Postal 70-243, Mexico City, 04510, México.,Aix-Marseille Université, AFMB UMR 7257, 13288 Marseille, France.,Institute for Protein Research, Osaka University, Osaka, Japan.,Institute for Biological and Medical Engineering, Schools of Engineering, Medicine, and Biological Sciences, Pontificia Universidad Católica de Chile, Santiago, Chile. Electronic address: cesar.ramirez@uc.cl.,Division of Structural Biology, The Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK. ren@strubi.ox.ac.uk.,Department of Pharmacology, School of Medicine, Case Western Reserve University, 10900 Euclid Ave., Cleveland, OH, 44106, USA. pdk7@case.edu.,Department of Neurology, David Geffen School of Medicine, UCLA, Los Angeles, CA, 90095, USA. jianglin@ucla.edu.,Beijing Advanced Innovation Center for Soft Matter Science and Engineering, Beijing University of Chemical Technology, Beijing, 100029, China. yuanqp@mail.buct.edu.cn.,Cancer Proteomics Mass Spectrometry, Department of Oncology-Pathology, Science for Life Laboratory, Karolinska Institutet, Box 1031, 171 21, Solna, Sweden.,Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, 20147, USA.,Structural Biology - Science Technology Platform, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.,Schulich Faculty of Chemistry, Technion - Israel Institute of Technology, Technion City, Haifa 32000, Israel.,Developmental Glycobiology Section, NIDCR, National Institutes of Health, 30 Convent Drive, Bethesda, MD, 20892-4370, USA. Kelly.Tenhagen@nih.gov.,Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037.,School of Cellular and Molecular Medicine, University of Bristol, UK.,Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA fwb4@cdc.gov.,California Nano Systems Institute, UCLA, Los Angeles, CA, 90095, USA. hong.zhou@ucla.edu.,Technology Center for Protein Sciences, Ministry of Education Key Laboratory of Protein Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China.,Scripps Center for HIV/AIDS Vaccine Immunology & Immunogen Discovery, The Scripps Research Institute, La Jolla, CA 92037.,IGF, University of Montpellier, CNRS, INSERM, Montpellier, 34094, France. cedric.leyrat@igf.cnrs.fr.,Collaboration for joint PhD degree between EMBL and Heidelberg University, Faculty of Biosciences.,Institute for Protein Research, Osaka University, Yamadaoka, Suita, Osaka, 565-0871, Japan.,Eli Lilly and Company, Discovery Chemistry Research and Technologies, Lilly Biotechnology Center, San Diego, California.,Department of Chemistry, McGill University, Montreal, QC H3A 0B8, Canada; clarkn@uthscsa.edu fitzpatrickp@uthscsa.edu masad.damha@mcgill.ca pjh@biochem.uthscsa.edu.,Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio. Electronic address: sotomayor.8@osu.edu.,Medical Research Center, Beijing Key Laboratory of Cardiopulmonary Cerebral Resuscitation, Beijing Chao-Yang Hospital, Capital Medical University, Beijing 100020, China.,Immuno-oncology Biology, Bristol-Myers Squibb Co., Princeton, NJ 08543.,Merck & Co., Inc., 33 Avenue Louis Pasteur, Boston, Massachusetts 02115, United States.,Department of Natural Product Biochemistry, Institute of Biochemistry and Biotechnology , Martin-Luther-University Halle-Wittenberg , 06120 Halle/Saale , Germany.,Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037; wilson@scripps.edu mlaw@scripps.edu.,School of Molecular and Cellular Biology, Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, UK.,Department of Chemistry, McGill University, Montreal, QC H3A 0B8, Canada.,Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, ON, Canada.,Department of Molecular Biosciences, The University of Texas, Austin, TX 78712.,Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037.,Department of Microbiology, University of Illinois, Urbana, IL 61801, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois, Urbana, IL 61801, USA.,Department of Biochemistry and Structural Biology, University of Texas Health Science Center, San Antonio, TX 78229.,Department of Biology, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA.,Department of Chemistry, University of Oxford, UK.,Departments of Biological Chemistry and Chemistry and Biochemistry, Howard Hughes Medical Institute, UCLA-DOE Institute, UCLA, Los Angeles, CA, 90095, USA.,National Laboratory of Biomacromolecules, Chinese Academy of Sciences Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.,Department of Biophysics, All India Institute of Medical Sciences, New Delhi, India.,the Department of Biochemistry, McGill Centre for Structural Biology, McGill University, Montreal, Quebec H3G 0B1, Canada.,Koch Institute for Integrative Cancer Research, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA.,National Institute for Basic Biology, Aichi, Japan.,Department of Applied Physics, Faculty of Science, Fukuoka University, Fukuoka, Japan.,Department of Rheumatology & Clinical Immunology, University of Groningen, University Medical Center Groningen, 9700 RB, Groningen, The Netherlands.,Division of Structural Biology, The Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.,Institute for chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Str. 2, 12489, Berlin, Germany.,IMCA-CAT, Hauptman-Woodward Medical Research Institute, APS Argonne National Laboratory, Argonne, Illinois.,CNRS, AFMB UMR 7257, 13288 Marseille, France.,Biotechnology Research Division, Korea Atomic Energy Research Institute, Jeongeup, 56212, Republic of Korea; Department of Radiation Science and Technology, University of Science and Technology, Daejeon, 34113, Republic of Korea. Electronic address: saylim@kaeri.re.kr.,Division of Structural Biology, The Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK. dave@strubi.ox.ac.uk.,Center for Microbial Pathogenesis, Institute for Biomedical Sciences, Georgia State University, Atlanta, GA 30303, USA; Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, CA 94158, USA; J. David Gladstone Institutes, San Francisco, CA 94158, USA.,State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing, 100029, China. yuanqp@mail.buct.edu.cn.,GlaxoSmithKline, Gunnels Wood Road, Stevenage, Hertfordshire SG1 2NY, United Kingdom.,the Department of Biochemistry, McGill Centre for Structural Biology, McGill University, Montreal, Quebec H3G 0B1, Canada kalle.gehring@mcgill.ca.,Institute of Infection and Immunity, Cardiff University, UK.,Structural Biology & Bio-Informatics Division, CSIR-Indian Institute of Chemical Biology, 4, Raja S.C. Mullick Road, Kolkata 700 032, India. Electronic address: jayati@iicb.res.in.,Developmental Glycobiology Section, NIDCR, National Institutes of Health, 30 Convent Drive, Bethesda, MD, 20892-4370, USA.,Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI, USA.,University of Chinese Academy of Sciences, Beijing, China.,Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037.,Department of Veterans Affairs, South Texas Veterans Health Care System, San Antonio, TX 78229.,Department of Chemistry, Fudan University, Shanghai, China.,Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio.,Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden. martin.ott@dbb.su.se.,Department of Chemistry & Physics, University of South Carolina Aiken, Aiken, SC 29811.,Department of Pharmacology, School of Medicine, Case Western Reserve University, 10900 Euclid Ave., Cleveland, OH, 44106, USA.,Department of Functional Bioscience, Infection Biology, Fukuoka Dental College, Matsudo, Tamura, Sawara, Fukuoka, 814-0913, Japan.,Dipartimento di Scienze Chimiche, Università degli Studi di Napoli "Federico II", Via Cintia, I-80126 Napoli, Italy.,Department of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322, USA. Electronic address: eortlun@emory.edu.,Northeastern Collaborative Access Team, Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853.,National Center for Protein Science, Shanghai, China.,Department of Biotechnology and Bioengineering, Interdisciplinary Program for Bioenergy and Biomaterials, Chonnam National University, Gwangju, 61186, Republic of Korea.,International AIDS Vaccine Initiative Neutralizing Antibody Center and the Collaboration for AIDS Vaccine Discovery, The Scripps Research Institute, La Jolla, CA 92037.,Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, 100871, China.,State Key Laboratory of Microbial Metabolism, School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, China.,Key Laboratory of Structural Biology, School of Life Sciences, University of Science and Technology of China, Hefei, China.,The Microbiology Group, Department of Biology, Lund University, Sölvegatan 35, 223 62 Lund, Sweden. Electronic address: claes.von_wachenfeldt@biol.lu.se.,Laboratorio Nacional de Genómica para la Biodiversidad, Centro de Investigación y de Estudios Avanzados del IPN, Apartado Postal 629, Irapuato, Guanajuato, CP 36821, México.,Department of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322, USA.,National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Science, Beijing, China.,Synthesis and Solid State Pharmaceutical Centre (SSPC), School of Chemistry, University College Dublin, Dublin, Ireland.,Eli Lilly and Company, Lilly Research Laboratories, Avenida de la Industria, Alcobendas, Spain.,Department of Microbiology, Immunology and Molecular Genetics, UCLA, Los Angeles, CA, 90095, USA. hong.zhou@ucla.edu.,Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.,Department of Biochemistry and Structural Biology, Lund University, PO Box 124, 221 00 Lund, Sweden.,The Microbiology Group, Department of Biology, Lund University, Sölvegatan 35, 223 62 Lund, Sweden; Department of Biochemistry and Structural Biology, Lund University, PO Box 124, 221 00 Lund, Sweden.,Institute of Protein Biochemistry, Ulm University, 89081, Ulm, Germany. matthias.schmidt@uni-ulm.de.,Department of Neurology, Huashan Hospital, Fudan University, Shanghai 200040, China.,Howard Hughes Medical Institute, Harvard University, 250 Longwood Avenue, Boston, MA 02115, USA.,Merck & Co., Inc., 2015 Galloping Hill Road, Kenilworth, New Jersey 07033, United States.,Illawarra Health & Medical Research Institute , Wollongong , NSW 2522 , Australia.,Department of Macromolecular Science, Graduate School of Science, Osaka, Japan. gkurisu@protein.osaka-u.ac.jp.,Department of Radiochemistry, Bristol-Myers Squibb Co., Princeton, NJ 08543.,The Pirbright Institute, Pirbright, UK.,Molecular Horizons and School of Chemistry & Molecular Bioscience , University of Wollongong , Wollongong , NSW 2522 , Australia.,State Key Laboratory of Membrane Biology, Tsinghua University, Beijing 100084, China. nyan@princeton.edu.,Institute for Biological and Medical Engineering, Schools of Engineering, Medicine, and Biological Sciences, Pontificia Universidad Católica de Chile, Santiago, Chile; Department of Chemical and Bioprocesses Engineering, School of Engineering, Pontificia Universidad Católica de Chile, Santiago, Chile. Electronic address: lparraa@ing.puc.cl.,Department of Medical Chemistry, Institute of Pharmacy , Martin-Luther-University Halle-Wittenberg , 06120 Halle/Saale , Germany.,Laboratorio de Investigación Bioquímica, Programa Institucional en Biomedicina Molecular ENMyH-Instituto Politécnico Nacional, Guillermo Massieu Helguera No. 239, La Escalera Ticoman, D.F, Mexico City, 07320, Mexico.,Tri-Institutional PhD Program in Chemical Biology , Memorial Sloan Kettering Cancer Center , New York , New York 10065 , United States.,Schulich Faculty of Chemistry, Technion - Israel Institute of Technology, Technion City, Haifa 32000, Israel. Electronic address: noam@ch.technion.ac.il.,Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037; wilson@scripps.edu mlaw@scripps.edu.,Department of Virology and Immunology, Texas Biomedical Research Institute, San Antonio, TX 78245, USA.,CNR Istituto di Biostrutture e Bioimmagini, Via Mezzocannone 16, I-80134 Napoli, Italy.,Department of Medical Cell Biology, Uppsala University, SE-75123, Uppsala, Sweden.,Institute for Protein Research, Osaka University, Osaka, Japan. gkurisu@protein.osaka-u.ac.jp.,Department of Biochemistry, The Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, USA.,State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200433, China.,Molecular Discovery Technologies, Bristol-Myers Squibb Co., Princeton, NJ 08543.,Department of Chemistry, Franklin and Marshall College, PO Box 3003, Lancaster, PA 17604, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Minor nucleoprotein VP30
A
127Zaire ebolavirus (strain Kikwit-95)Mutation(s): 0 
Gene Names: VP30
Find proteins for Q77DJ5 (Zaire ebolavirus (strain Kikwit-95))
Go to UniProtKB:  Q77DJ5
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
E3 ubiquitin-protein ligase RBBP6
B
15Homo sapiensMutation(s): 0 
Gene Names: RBBP6 (P2PR, PACT, RBQ1)
EC: 2.3.2.27
Find proteins for Q7Z6E9 (Homo sapiens)
Go to Gene View: RBBP6
Go to UniProtKB:  Q7Z6E9
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.189 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 45.600α = 90.00
b = 45.600β = 90.00
c = 158.710γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
XDSdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI120943
National Institutes of Health/National Human Genome Research InstituteUnited StatesAI123926

Revision History 

  • Version 1.0: 2018-12-12
    Type: Initial release
  • Version 1.1: 2019-02-20
    Type: Data collection, Database references