Download MendeleyCrystal structure of LpxC from Pseudomonas aeruginosa in complex with ligand PT802
Delker, S.L., Mayclin, S.J., Phan, J.N., Abendroth, J., Lorimer, D., Edwards, T.E.To be published.
6E54
Crystal structure of LpxC from Pseudomonas aeruginosa in complex with ligand PT802
- PDB DOI: https://doi.org/10.2210/pdb6E54/pdb
- Classification: hydrolase/hydrolase inhibitor
- Organism(s): Pseudomonas aeruginosa PAO1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2018-07-19 Released: 2019-06-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.185
- R-Value Work: 0.149
- R-Value Observed: 0.151
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| UDP-3-O-acyl-N-acetylglucosamine deacetylase | 304 | Pseudomonas aeruginosa PAO1 | Mutation(s): 0 Gene Names: lpxC, envA, PA4406 EC: 3.5.1.108 |  | |
UniProt | |||||
Find proteins for P47205 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore P47205 Go to UniProtKB: P47205 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P47205 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| JCG Query on JCG | C [auth A] | (2R)-4-{4-[4-(benzyloxy)-2-fluorophenyl]-2-oxopyridin-1(2H)-yl}-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide C24 H25 F N2 O6 S RPIBMYVEZQVKQW-XMMPIXPASA-N |  | ||
| HUM Query on HUM | B [auth A] | (2S)-4-{4-[4-(benzyloxy)-2-fluorophenyl]-2-oxopyridin-1(2H)-yl}-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide C24 H25 F N2 O6 S RPIBMYVEZQVKQW-DEOSSOPVSA-N |  | ||
| ZN Query on ZN | D [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CA Query on CA | E [auth A], F [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| CL Query on CL | G [auth A], H [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.185
- R-Value Work: 0.149
- R-Value Observed: 0.151
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 35.64 | α = 111.68 |
| b = 47.74 | β = 107.87 |
| c = 48.35 | γ = 99.27 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| MOLREP | phasing |
| XDS | data collection |
Entry History
Deposition Data
- Released Date: 2019-06-26 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2019-06-26
Type: Initial release - Version 1.1: 2023-10-11
Changes: Data collection, Database references, Derived calculations, Refinement description
