6E4R

Crystal Structure of the Drosophila Melanogaster Polypeptide N-Acetylgalactosaminyl Transferase PGANT9B


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.061 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

A molecular switch orchestrates enzyme specificity and secretory granule morphology.

Ji, S.Samara, N.L.Revoredo, L.Zhang, L.Tran, D.T.Muirhead, K.Tabak, L.A.Ten Hagen, K.G.

(2018) Nat Commun 9: 3508-3508


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
polypeptide N-acetylgalactosaminyltransferase 9
A, B
507Drosophila melanogasterMutation(s): 0 
Gene Names: pgant9
EC: 2.4.1.41
Find proteins for Q8MRC9 (Drosophila melanogaster)
Go to UniProtKB:  Q8MRC9
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

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Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
PGE
Query on PGE

Download SDF File 
Download CCD File 
A
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.061 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.164 
  • Space Group: I 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 113.913α = 90.00
b = 48.440β = 91.40
c = 232.037γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
Aimlessdata scaling
PHENIXrefinement
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-09-12
    Type: Initial release