6E3I

Human Bfl-1 in complex with the Bfl-1-specific designed peptide srt.F4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.481 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.139 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Peptide design by optimization on a data-parameterized protein interaction landscape.

Jenson, J.M.Xue, V.Stretz, L.Mandal, T.Reich, L.L.Keating, A.E.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: E10342-E10351


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Bcl-2-related protein A1
A
152Homo sapiensMutation(s): 0 
Gene Names: BCL2A1 (BCL2L5, BFL1, GRS, HBPA1)
Find proteins for Q16548 (Homo sapiens)
Go to Gene View: BCL2A1
Go to UniProtKB:  Q16548
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
peptide srt.F4
B
23N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
NH2
Query on NH2
B
NON-POLYMERH2 N

--

ACE
Query on ACE
B
NON-POLYMERC2 H4 O

--

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.481 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.139 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 43.220α = 90.00
b = 42.947β = 114.73
c = 46.762γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesR01-GM110048

Revision History 

  • Version 1.0: 2018-10-17
    Type: Initial release
  • Version 1.1: 2018-10-31
    Type: Data collection, Database references
  • Version 1.2: 2018-11-14
    Type: Data collection, Database references