6E33

DNA binding transcription factor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.705 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Distinctive structural basis for DNA recognition by the fission yeast Zn2Cys6 transcription factor Pho7 and its role in phosphate homeostasis.

Garg, A.Goldgur, Y.Schwer, B.Shuman, S.

(2018) Nucleic Acids Res. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Uncharacterized transcriptional regulatory protein C27B12.11c
A
61Schizosaccharomyces pombe (strain 972 / ATCC 24843)Mutation(s): 0 
Find proteins for O13658 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
Go to UniProtKB:  O13658
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*TP*CP*CP*TP*TP*CP*GP*GP*AP*CP*AP*TP*TP*CP*AP*AP*AP*TP*CP*A)-3')C20Schizosaccharomyces pombe
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(*GP*AP*TP*TP*TP*GP*AP*AP*TP*GP*TP*CP*CP*GP*AP*AP*GP*GP*AP*T)-3')B20Schizosaccharomyces pombe
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.705 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.188 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 50.827α = 90.00
b = 40.682β = 105.84
c = 58.237γ = 90.00
Software Package:
Software NamePurpose
Omodel building
HKL-2000data reduction
SHELXCDphasing
PHENIXrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer InstituteUnited StatesR35 GM126945

Revision History 

  • Version 1.0: 2018-10-24
    Type: Initial release