6E2B

Ubiquitin in complex with Pt(2-phenilpyridine)(PPh3)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.181 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Reactions of Cyclometalated Platinum(II) [Pt(N∧C)(PR3)Cl] Complexes with Imidazole and Imidazole-Containing Biomolecules: Fine-Tuning of Reactivity and Photophysical Properties via Ligand Design.

Solomatina, A.I.Chelushkin, P.S.Abakumova, T.O.Zhemkov, V.A.Kim, M.Bezprozvanny, I.Gurzhiy, V.V.Melnikov, A.S.Anufrikov, Y.A.Koshevoy, I.O.Su, S.H.Chou, P.T.Tunik, S.P.

(2018) Inorg Chem --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin
A, C, E, G, I, P
76Bos taurusMutation(s): 0 
Gene Names: RPS27A (UBA80, UBCEP1)
Find proteins for P62992 (Bos taurus)
Go to Gene View: RPS27A
Go to UniProtKB:  P62992
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, I, P
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, C, E, I
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
PT7
Query on PT7

Download SDF File 
Download CCD File 
A, C, P
chloro[2-(pyridin-2-yl-kappaN)phenyl-kappaC~1~](triphenyl-lambda~5~-phosphanyl)platinum(2+)
PtII(2-phenylpyridine)(tri-phenylphosphine)Cl
C29 H23 Cl N P Pt
KHJLZDWNJSEPIZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.181 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 140.381α = 90.00
b = 140.381β = 90.00
c = 62.447γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
REFMACrefinement
PHASERphasing
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-07-11 
  • Released Date: 2018-11-14 
  • Deposition Author(s): Zhemkov, V.A., Kim, M.

Funding OrganizationLocationGrant Number
Russian Science FoundationRussian Federation16-43-03003
Other governmentRussian Federation17.991.2017/PCh

Revision History 

  • Version 1.0: 2018-11-14
    Type: Initial release