6E0V

Apo crystal structure of the colanidase tailspike protein gp150 of Phage Phi92


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.163 
  • R-Value Work: 0.134 
  • R-Value Observed: 0.135 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Crystal structure of the colanidase tailspike protein gp150 of Phage Phi92 complexed with one repeating unit of colanic acid

Browning, C.Plattner, M.Shneider, M.M.Gerardy-Schahn, R.Leiman, P.G.Schwarzer, D.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Bacteriophage Phi92 gp150A, B, C626Enterobacteria phage phi92Mutation(s): 0 
Gene Names: PHI92_gene_150PHI92_150
UniProt
Find proteins for I7I026 (Enterobacteria phage phi92)
Explore I7I026 
Go to UniProtKB:  I7I026
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
EA [auth B], FA [auth B], GA [auth B], N [auth A], O [auth A], P [auth A], VA [auth C], WA [auth C]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
SR
Query on SR

Download Ideal Coordinates CCD File 
AA [auth B] , D [auth A] , E [auth A] , F [auth A] , G [auth A] , H [auth A] , I [auth A] , J [auth A] , 
AA [auth B],  D [auth A],  E [auth A],  F [auth A],  G [auth A],  H [auth A],  I [auth A],  J [auth A],  KA [auth C],  LA [auth C],  MA [auth C],  NA [auth C],  OA [auth C],  PA [auth C],  QA [auth C],  RA [auth C],  S [auth B],  T [auth B],  U [auth B],  V [auth B],  W [auth B],  X [auth B],  Y [auth B],  Z [auth B]
STRONTIUM ION
Sr
PWYYWQHXAPXYMF-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
HA [auth B], IA [auth B], JA [auth B], Q [auth A], R [auth A], XA [auth C], YA [auth C], ZA [auth C]1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
BA [auth B] , CA [auth B] , DA [auth B] , K [auth A] , L [auth A] , M [auth A] , SA [auth C] , TA [auth C] , 
BA [auth B],  CA [auth B],  DA [auth B],  K [auth A],  L [auth A],  M [auth A],  SA [auth C],  TA [auth C],  UA [auth C]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.163 
  • R-Value Work: 0.134 
  • R-Value Observed: 0.135 
  • Space Group: P 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 118.4α = 90
b = 118.4β = 90
c = 140.166γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-07-17
    Type: Initial release