6E00

Structure of a N-Me-p-iodo-D-Phe1,N-Me-D-Gln4,Lys10-teixobactin analogue

  • Classification: ANTIBIOTIC

  • Deposited: 2018-07-05 Released: 2018-10-17 
  • Deposition Author(s): Nowick, J.S., Yang, H., Wierzbicki, M.
  • Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.211 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

X-ray Crystallographic Structure of a Teixobactin Derivative Reveals Amyloid-like Assembly.

Yang, H.Wierzbicki, M.Du Bois, D.R.Nowick, J.S.

(2018) J. Am. Chem. Soc. 140: 14028-14032


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
N-Me-p-iodo-D-Phe1,N-Me-D-Gln4,Lys10-teixobactin analogue
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p
11N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, a, B, b, C, c, d, D, e, E, F, f, g, G, H, h, i, I, j, J, k, K, L, l, m, M, N, n, O, o, P, p
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Biologically Interesting Molecules 1 Unique
IDChainsNameType/Class2D Diagram3D Interactions
PRD_002317
Query on PRD_002317
A,a,b,B,C,c,d,D,E,e,f,G,g,H,h,i,I,J,j,k,K,L,l,m,M,N,n,o,O,pN-Me-p-iodo-D-Phe1,N-Me-D-Gln4,Lys10-teixobactin analoguePeptide-like / Antibiotic

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.211 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 47.478α = 90.00
b = 69.370β = 90.00
c = 115.422γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
PHENIXphasing
Aimlessdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited States1R21AI121548-01

Revision History 

  • Version 1.0: 2018-10-17
    Type: Initial release
  • Version 1.1: 2018-11-14
    Type: Data collection, Database references