6DZU | pdb_00006dzu

Mechanism of cellular recognition by PCV2

• PDB DOI: https://doi.org/10.2210/pdb6DZU/pdb
• EM Map EMD-8939: EMDB EMDataResource

• Classification: VIRUS LIKE PARTICLE
• Organism(s): Porcine circovirus 2
• Expression System: Trichoplusia ni
• Mutation(s): No 


• Deposited: 2018-07-05 Released: 2018-12-26 
• Deposition Author(s): Khayat, R., Dhindwal, S.
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.30 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structure of Porcine Circovirus 2 at 3.2 Angstroms resolution

Dhindwal, S., Avila, B., Khayat, R.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Homo 60-mer - A60 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 1,314.82 kDa 
• Atom Count: 93,060 
• Modeled Residue Count: 11,340 
• Deposited Residue Count: 11,340 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative capsid protein	A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], BB [auth As], C [auth A3], CA [auth AT], CB [auth At], D [auth A4], DA [auth AU], DB [auth Au], E [auth A5], EA [auth AV], EB [auth Av], F [auth A6], FA [auth AW], FB [auth Aw], G [auth A7], GA [auth AX], GB [auth Ax], H [auth A8], HA [auth AY], HB [auth Ay], I [auth A9], IA [auth AZ], J [auth AA], JA [auth Aa], K [auth AB], KA [auth Ab], L [auth AC], LA [auth Ac], M [auth AD], MA [auth Ad], N [auth AE], NA [auth Ae], O [auth AF], OA [auth Af], P [auth AG], PA [auth Ag], Q [auth AH], QA [auth Ah], R [auth AI], RA [auth Ai], S [auth AJ], SA [auth Aj], T [auth AK], TA [auth Ak], U [auth AL], UA [auth Al], V [auth AM], VA [auth Am], W [auth AN], WA [auth An], X [auth AO], XA [auth Ao], Y [auth AP], YA [auth Ap], Z [auth AQ], ZA [auth Aq]	189	Porcine circovirus 2	Mutation(s): 0  Gene Names: ORF2
UniProt
Find proteins for G0ZPJ2 (Porcine circovirus 2) Explore G0ZPJ2  Go to UniProtKB:  G0ZPJ2

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.30 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC
MODEL REFINEMENT	PHENIX

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2018-12-26 
Deposition Author(s): Khayat, R., Dhindwal, S.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	5SC1AI114843

Revision History  

• Version 1.0: 2018-12-26
  Type: Initial release
  
• Version 1.1: 2019-12-18
  Changes: Author supporting evidence, Database references
• Version 1.2: 2024-03-13
  Changes: Data collection, Database references