6DY9

Crystal structure of double-stranded DNA GGGATCCC; crystals grown in Zn2+


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.253 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Utilizing guanine coordinated Zn2+ to determine DNA crystal structures by single-wavelength anomalous diffraction

Hou, C.Tsodikov, O.V.

(2019) Acta Crystallogr.,Sect.D 75: 32


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*GP*GP*GP*AP*TP*CP*CP*C)-3')A,B8synthetic construct
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.253 
  • Space Group: P 61
Unit Cell:
Length (Å)Angle (°)
a = 46.221α = 90.00
b = 46.221β = 90.00
c = 43.426γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
AutoSolphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
United StatesDoD PC150300P1

Revision History 

  • Version 1.0: 2019-01-23
    Type: Initial release