6DX0

Hermes transposase deletion dimer complex with (A/T) DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.305 
  • R-Value Work: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Hermes transposase deletion dimer complex with (C/G) DNA and Ca

Dyda, F.Hickman, A.B.

(2018) Nucleic Acids Res. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hermes transposase
A
517Musca domesticaMutation(s): 1 
Find proteins for Q25438 (Musca domestica)
Go to UniProtKB:  Q25438
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*AP*GP*AP*GP*AP*AP*CP*AP*AP*CP*AP*AP*CP*AP*AP*G)-3')B16Musca domestica
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (25-MER)C25Musca domestica
Entity ID: 4
MoleculeChainsLengthOrganism
DNA (5'-D(*GP*CP*GP*TP*GP*AP*A)-3')D7Musca domestica
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.305 
  • R-Value Work: 0.225 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 121.600α = 90.00
b = 135.500β = 90.00
c = 102.850γ = 90.00
Software Package:
Software NamePurpose
AMoREphasing
PHENIXrefinement
XDSdata reduction
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-09-19
    Type: Initial release