6DUQ

Structure of a Rho-NusG KOW domain complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.7 Å
  • R-Value Free: 0.300 
  • R-Value Work: 0.287 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Mechanism for the Regulated Control of Bacterial Transcription Termination by a Universal Adaptor Protein.

Lawson, M.R.Ma, W.Bellecourt, M.J.Artsimovitch, I.Martin, A.Landick, R.Schulten, K.Berger, J.M.

(2018) Mol. Cell --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Transcription termination factor Rho
L, A, G, B, H, C, I, D, K, F, J, E
422Escherichia coli M718Mutation(s): 0 
Gene Names: rho
EC: 3.6.4.-
Find proteins for F4TMM7 (Escherichia coli M718)
Go to UniProtKB:  F4TMM7
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Transcription termination/antitermination protein NusG
M, N, O, P, Q, R, S, T, U, V, W, X
60Escherichia coli M605Mutation(s): 0 
Gene Names: nusG
Find proteins for F4T6L5 (Escherichia coli M605)
Go to UniProtKB:  F4T6L5
Entity ID: 3
MoleculeChainsLengthOrganism
rU12Y,Z12synthetic construct
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ADP
Query on ADP

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

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Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
BEF
Query on BEF

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L
BERYLLIUM TRIFLUORIDE ION
Be F3
OGIAHMCCNXDTIE-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.7 Å
  • R-Value Free: 0.300 
  • R-Value Work: 0.287 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 126.350α = 89.94
b = 126.320β = 89.90
c = 166.820γ = 60.01
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
PHENIXrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM071747
United StatesG. Harold and Leila Y. Mathers Foundation

Revision History 

  • Version 1.0: 2018-09-05
    Type: Initial release