6DTK

Heterodimers of FALS mutant SOD enzyme

PDB DOI: https://doi.org/10.2210/pdb6DTK/pdb

Classification: OXIDOREDUCTASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2018-06-17 Released: 2019-06-19
Deposition Author(s): Streltsov, V.A., Nuttall, S.D., Ganio, K.E., Roberts, B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.190
R-Value Work: 0.156
R-Value Observed: 0.158

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural characterization of heterodimers of FALS mutant SOD enzyme

Streltsov, V.A., Nuttall, S.D., Ganio, K.E., Roberts, B.

To be published.

Macromolecule Content

Total Structure Weight: 165.02 kDa
Atom Count: 12,729
Modelled Residue Count: 1,572
Deposited Residue Count: 1,625
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Superoxide dismutase C111S/D83S-C111S HETERODIMER	A, B [auth C], C [auth E], D [auth G], E [auth I]	323	Homo sapiens	Mutation(s): 4 Gene Names: SOD1 EC: 1.15.1.1
UniProt & NIH Common Fund Data Resources
Find proteins for P00441 (Homo sapiens) Explore P00441 Go to UniProtKB: P00441
PHAROS: P00441
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P00441
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MLI Query on MLI Download Ideal Coordinates CCD File SDF format, chain R [auth E] MOL2 format, chain R [auth E]	R [auth E]	MALONATE ION C₃ H₂ O₄ OFOBLEOULBTSOW-UHFFFAOYSA-L		Interactions Focus chain R [auth E] Interactions & Density Focus chain R [auth E]
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain H [auth A] SDF format, chain J [auth C] SDF format, chain L [auth C] SDF format, chain N [auth E] SDF format, chain P [auth E] SDF format, chain S [auth G] SDF format, chain U [auth G] SDF format, chain W [auth I] SDF format, chain Y [auth I] MOL2 format, chain F [auth A] MOL2 format, chain H [auth A] MOL2 format, chain J [auth C] MOL2 format, chain L [auth C] MOL2 format, chain N [auth E] MOL2 format, chain P [auth E] MOL2 format, chain S [auth G] MOL2 format, chain U [auth G] MOL2 format, chain W [auth I] MOL2 format, chain Y [auth I]	F [auth A] H [auth A] J [auth C] L [auth C] N [auth E] F [auth A], H [auth A], J [auth C], L [auth C], N [auth E], P [auth E], S [auth G], U [auth G], W [auth I], Y [auth I]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain H [auth A] Focus chain J [auth C] Focus chain L [auth C] Focus chain N [auth E] Focus chain P [auth E] Focus chain S [auth G] Focus chain U [auth G] Focus chain W [auth I] Focus chain Y [auth I] Interactions & Density Focus chain F [auth A] Focus chain H [auth A] Focus chain J [auth C] Focus chain L [auth C] Focus chain N [auth E] Focus chain P [auth E] Focus chain S [auth G] Focus chain U [auth G] Focus chain W [auth I] Focus chain Y [auth I]
CU Query on CU Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain I [auth A] SDF format, chain K [auth C] SDF format, chain M [auth C] SDF format, chain O [auth E] SDF format, chain Q [auth E] SDF format, chain T [auth G] SDF format, chain V [auth G] SDF format, chain X [auth I] SDF format, chain Z [auth I] MOL2 format, chain G [auth A] MOL2 format, chain I [auth A] MOL2 format, chain K [auth C] MOL2 format, chain M [auth C] MOL2 format, chain O [auth E] MOL2 format, chain Q [auth E] MOL2 format, chain T [auth G] MOL2 format, chain V [auth G] MOL2 format, chain X [auth I] MOL2 format, chain Z [auth I]	G [auth A] I [auth A] K [auth C] M [auth C] O [auth E] G [auth A], I [auth A], K [auth C], M [auth C], O [auth E], Q [auth E], T [auth G], V [auth G], X [auth I], Z [auth I]	COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Focus chain I [auth A] Focus chain K [auth C] Focus chain M [auth C] Focus chain O [auth E] Focus chain Q [auth E] Focus chain T [auth G] Focus chain V [auth G] Focus chain X [auth I] Focus chain Z [auth I] Interactions & Density Focus chain G [auth A] Focus chain I [auth A] Focus chain K [auth C] Focus chain M [auth C] Focus chain O [auth E] Focus chain Q [auth E] Focus chain T [auth G] Focus chain V [auth G] Focus chain X [auth I] Focus chain Z [auth I]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.190
R-Value Work: 0.156
R-Value Observed: 0.158
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 162.699	α = 90
b = 201.671	β = 90
c = 143.834	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2019-06-19

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-06-19
Type: Initial release
Version 1.1: 2023-10-11
Changes: Data collection, Database references, Derived calculations, Refinement description