6DSZ

Crystal structure of DDB1 in complex with DET1- and DDB1-associated protein 1 (DDA1)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.093 Å
  • R-Value Free: 0.307 
  • R-Value Work: 0.247 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural insights into DDA1 function as a core component of the CRL4-DDB1 ubiquitin ligase.

Shabek, N.Ruble, J.Waston, C.J.Garbutt, K.C.Hinds, T.R.Li, T.Zheng, N.

(2018) Cell Discov 4: 67-67


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DNA damage-binding protein 1
A, B
1140Homo sapiensMutation(s): 0 
Gene Names: DDB1 (XAP1)
Find proteins for Q16531 (Homo sapiens)
Go to Gene View: DDB1
Go to UniProtKB:  Q16531
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
DET1- and DDB1-associated protein 1
C, D
19Homo sapiensMutation(s): 0 
Gene Names: DDA1 (C19orf58, PCIA1)
Find proteins for Q9BW61 (Homo sapiens)
Go to Gene View: DDA1
Go to UniProtKB:  Q9BW61
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.093 Å
  • R-Value Free: 0.307 
  • R-Value Work: 0.247 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 63.196α = 90.00
b = 219.175β = 89.98
c = 89.317γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHENIXrefinement
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-06-14 
  • Released Date: 2018-12-12 
  • Deposition Author(s): Shabek, N., Zheng, N.

Revision History 

  • Version 1.0: 2018-12-12
    Type: Initial release
  • Version 1.1: 2019-01-02
    Type: Data collection, Database references