6DSP

LsrB from Clostridium saccharobutylicum in complex with AI-2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Free: 0.177 
  • R-Value Work: 0.159 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

LsrB from Clostridium saccharobutylicum in complex with AI-2

Torcato, I.M.Xavier, K.B.Miller, S.T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Autoinducer 2-binding protein LsrB
A, B
347Clostridium saccharobutylicum DSM 13864Mutation(s): 0 
Gene Names: lsrB
Find proteins for U5MRH9 (Clostridium saccharobutylicum DSM 13864)
Go to UniProtKB:  U5MRH9
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PAV
Query on PAV

Download SDF File 
Download CCD File 
A, B
(2R,4S)-2-METHYL-2,3,3,4-TETRAHYDROXYTETRAHYDROFURAN
C5 H10 O5
BVIYGXUQVXBHQS-IUYQGCFVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Free: 0.177 
  • R-Value Work: 0.159 
  • Space Group: P 43 2 2
Unit Cell:
Length (Å)Angle (°)
a = 90.780α = 90.00
b = 90.780β = 90.00
c = 182.810γ = 90.00
Software Package:
Software NamePurpose
iMOSFLMdata reduction
PHASERphasing
Aimlessdata scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentPortugalPTDC/BIA-MIC/4188/14

Revision History 

  • Version 1.0: 2019-02-06
    Type: Initial release
  • Version 1.1: 2019-04-17
    Type: Author supporting evidence, Data collection