6DRY

Structural Determinants of Activation and Biased Agonism at the 5-HT2B Receptor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.918 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.235 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural determinants of 5-HT2Breceptor activation and biased agonism.

McCorvy, J.D.Wacker, D.Wang, S.Agegnehu, B.Liu, J.Lansu, K.Tribo, A.R.Olsen, R.H.J.Che, T.Jin, J.Roth, B.L.

(2018) Nat. Struct. Mol. Biol. 25: 787-796


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
5HT2B receptor, BRIL chimera
A
411Escherichia coliHomo sapiens
This entity is chimeric
Mutation(s): 2 
Gene Names: cybC, HTR2B
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
G Protein-Coupled Receptors (GPCRs)
Protein: 
5-HT2B serotonin receptor with bound ergotamine
Find proteins for P0ABE7 (Escherichia coli)
Go to UniProtKB:  P0ABE7
Find proteins for P41595 (Homo sapiens)
Go to Gene View: HTR2B
Go to UniProtKB:  P41595
Small Molecules
Ligands 6 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OLC
Query on OLC

Download SDF File 
Download CCD File 
A
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
 Ligand Interaction
PO4
Query on PO4

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Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
OLA
Query on OLA

Download SDF File 
Download CCD File 
A
OLEIC ACID
C18 H34 O2
ZQPPMHVWECSIRJ-KTKRTIGZSA-N
 Ligand Interaction
H8D
Query on H8D

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Download CCD File 
A
(8beta)-N-[(2S)-1-hydroxybutan-2-yl]-6-methyl-9,10-didehydroergoline-8-carboxamide
methylergonovine
C20 H25 N3 O2
UNBRKDKAWYKMIV-QWQRMKEZSA-N
 Ligand Interaction
PEG
Query on PEG

Download SDF File 
Download CCD File 
A
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
CLR
Query on CLR

Download SDF File 
Download CCD File 
A
CHOLESTEROL
C27 H46 O
HVYWMOMLDIMFJA-DPAQBDIFSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.918 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.235 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 59.662α = 90.00
b = 119.452β = 90.00
c = 171.021γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data scaling
PHENIXrefinement
PHASERphasing
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited StatesRO1MH61887
National Institutes of Health/National Human Genome Research InstituteUnited StatesU19MH82441
National Institutes of Health/National Human Genome Research InstituteUnited StatesR01NS100930
National Institutes of Health/National Cancer InstituteUnited StatesACB-12002
National Institutes of Health/National Institute of General Medical SciencesUnited StatesAGM-12006
Department of Energy (United States)United StatesDE-AC02-06CH11357

Revision History 

  • Version 1.0: 2018-08-29
    Type: Initial release
  • Version 1.1: 2018-09-05
    Type: Data collection, Database references
  • Version 1.2: 2018-09-19
    Type: Data collection, Database references