6DO2

Crystal structure of human GRP78 in complex with 7-deaza-2'-C-methyladenosine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.208 

wwPDB Validation 3D Report Full Report



Literature

Crystal structure of human GRP78 in complex with 7-deaza-2'-C-methyladenosine

Ferrie, R.P.Chen, Y.Antoshchenko, T.Cooney, O.M.Huang, Y.Park, H.W.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Endoplasmic reticulum chaperone BiPAB382Homo sapiensMutation(s): 0 
Gene Names: HSPA5GRP78
EC: 3.6.4.10
Find proteins for P11021 (Homo sapiens)
Explore P11021 
Go to UniProtKB:  P11021
NIH Common Fund Data Resources
PHAROS  P11021
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
H5V
Query on H5V

Download CCD File 
A, B
7-(2-C-methyl-beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine
C12 H16 N4 O4
IRZRJANZDIOOIF-GAJNKVMBSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.208 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 55.41α = 90
b = 75.02β = 99.11
c = 89.48γ = 90
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
BUSTERrefinement
XDSdata reduction
BUSTERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-06-12
    Type: Initial release