6DNJ

Directed evolutionary changes in Kemp Eliminase KE07 - Crystal 28 round 5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.182 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The evolution of multiple active site configurations in a designed enzyme.

Hong, N.S.Petrovic, D.Lee, R.Gryn'ova, G.Purg, M.Saunders, J.Bauer, P.Carr, P.D.Lin, C.Y.Mabbitt, P.D.Zhang, W.Altamore, T.Easton, C.Coote, M.L.Kamerlin, S.C.L.Jackson, C.J.

(2018) Nat Commun 9: 3900-3900


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Kemp eliminase KE07
A
264N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
H5J
Query on H5J

Download SDF File 
Download CCD File 
A
5-nitro-1,2-benzoxazole
C7 H4 N2 O3
TWOYWCWKYDYTIP-UHFFFAOYSA-N
 Ligand Interaction
MPD
Query on MPD

Download SDF File 
Download CCD File 
A
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.182 
  • R-Value Work: 0.172 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 97.350α = 90.00
b = 97.350β = 90.00
c = 156.171γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
MOLREPphasing
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-08-01
    Type: Initial release
  • Version 1.1: 2019-02-13
    Type: Data collection, Database references