6DMM

Crystal structure of the G23A mutant of human alpha defensin HNP4.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.67 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.218 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Systematic mutational analysis of human neutrophil alpha-defensin HNP4.

Hu, H.Di, B.Tolbert, W.D.Gohain, N.Yuan, W.Gao, P.Ma, B.He, Q.Pazgier, M.Zhao, L.Lu, W.

(2019) Biochim Biophys Acta Biomembr 1861: 835-844


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Neutrophil defensin 4
A, B, C, D, E, F, G, H, I, J, K, L
33Homo sapiensMutation(s): 1 
Gene Names: DEFA4 (DEF4)
Find proteins for P12838 (Homo sapiens)
Go to Gene View: DEFA4
Go to UniProtKB:  P12838
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, D, E, F, G, H, I, J, K, L
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
MPD
Query on MPD

Download SDF File 
Download CCD File 
B, J
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.67 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.218 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 41.629α = 90.00
b = 65.894β = 90.00
c = 124.064γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHASERphasing
HKL-2000data scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-01-30
    Type: Initial release
  • Version 1.1: 2019-02-20
    Type: Data collection, Database references