6DM6

Structure of DNA polymerase III subunit beta from Rickettsia conorii in complex with a natural product


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.181 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of DNA polymerase III subunit beta from Rickettsia conorii in complex with a natural product

Conrady, D.G.Abendroth, J.Higgins, T.W.Lorimer, D.D.Horanyi, P.S.Edwards, T.E.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Beta sliding clampA, B387Rickettsia conorii str. Malish 7Mutation(s): 0 
Gene Names: dnaNRC0583
UniProt
Find proteins for Q92I37 (Rickettsia conorii (strain ATCC VR-613 / Malish 7))
Explore Q92I37 
Go to UniProtKB:  Q92I37
Protein Feature View
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  • Reference Sequence
  • Find similar proteins by:  Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Natural product peptideC, D11Streptomyces muensisMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Small Molecules
Modified Residues  3 Unique
IDChainsTypeFormula2D DiagramParent
MP8
Query on MP8
C, DL-PEPTIDE LINKINGC6 H11 N O2PRO
MVA
Query on MVA
C, DL-PEPTIDE LINKINGC6 H13 N O2VAL
NZC
Query on NZC
C, DL-PEPTIDE LINKINGC5 H11 N O3THR
Biologically Interesting Molecules (External Reference) 1 Unique
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.181 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 83.86α = 90
b = 41.83β = 93.92
c = 127.4γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-06-12
    Type: Initial release
  • Version 1.1: 2019-07-17
    Changes: Data collection, Derived calculations, Structure summary