6DJ8

Structure of DNA polymerase III subunit beta from Borrelia burgdorferi in complex with a natural product


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.203 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of DNA polymerase III subunit beta from Borrelia burgdorferi in complex with a natural product

Conrady, D.G.Abendroth, J.Higgins, T.W.Lorimer, D.D.Horanyi, P.S.Edwards, T.E.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Beta sliding clampA, B393Borreliella burgdorferi B31Mutation(s): 0 
Gene Names: dnaNBB_0438
UniProt
Find proteins for P33761 (Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680))
Explore P33761 
Go to UniProtKB:  P33761
Protein Feature View
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  • Reference Sequence
  • Find similar proteins by:  Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Natural product peptideC, D11StreptomycesMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Small Molecules
Modified Residues  3 Unique
IDChainsTypeFormula2D DiagramParent
MP8
Query on MP8
C, DL-PEPTIDE LINKINGC6 H11 N O2PRO
MVA
Query on MVA
C, DL-PEPTIDE LINKINGC6 H13 N O2VAL
NZC
Query on NZC
C, DL-PEPTIDE LINKINGC5 H11 N O3THR
Biologically Interesting Molecules (External Reference) 1 Unique
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 84.38α = 90
b = 68.29β = 113.7
c = 86.32γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
PHENIXphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-05-29
    Type: Initial release
  • Version 1.1: 2019-06-26
    Changes: Advisory, Data collection, Derived calculations
  • Version 1.2: 2019-07-17
    Changes: Data collection, Derived calculations, Structure summary