Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: authors reported there is no experimental evidence

Macromolecule Content

• Total Structure Weight: 22468.57 
• Atom Count: 1853 
• Residue Count: 198 
• Unique protein chains: 1

6DJ7

HIV-1 protease with mutation L76V in complex with GRL-5010 (gem-difluoro-bis-tetrahydrofuran as P2 ligand)

• DOI: 10.2210/pdb6DJ7/pdb

• Classification: HYDROLASE
• Organism(s): Human immunodeficiency virus 1
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): 6 


• Deposited: 2018-05-24 Released: 2018-10-17 
• Deposition Author(s): Wong-Sam, A.E., Wang, Y.F., Weber, I.T.
• Funding Organization(s): National Institutes of Health/National Human Genome Research Institute 

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.31 Å
• R-Value Free: 0.205 
• R-Value Work: 0.158 

Literature

Drug Resistance Mutation L76V Alters Nonpolar Interactions at the Flap-Core Interface of HIV-1 Protease.

Wong-Sam, A., Wang, Y.F., Zhang, Y., Ghosh, A.K., Harrison, R.W., Weber, I.T.

(2018) ACS Omega 3: 12132-12140

• PubMed: 30288468 
• Primary Citation of Related Structures:  
  6DJ5, 6DJ1, 6DJ2, 6DIL, 6DIF

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
HIV-1 protease	A, B	99	Human immunodeficiency virus 1	Mutation(s): 6  Gene Names: pol
Find proteins for Q5RZ08 (Human immunodeficiency virus 1) Go to UniProtKB:  Q5RZ08

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
NA	A	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N
ACT	B	ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M
CL	A, B	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M
GOL	A, B	GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
G10	B	(3R,3aS,6aS)-4,4-difluorohexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-4-{[(4-aminophenyl)sulfonyl](2-methylpropyl)amino}-3-hydroxy-1-phenylbutan-2-yl]carbamate C27 H35 F2 N3 O7 S UQYAKJSDOQPRAX-YCXOGWGTSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.31 Å
• R-Value Free: 0.205 
• R-Value Work: 0.158 
• Space Group: P 2₁ 2₁ 2

Unit Cell:

Length (Å)	Angle (°)
a = 58.264	α = 90.00
b = 86.053	β = 90.00
c = 46.252	γ = 90.00

Software Package:

Software Name	Purpose
HKL-2000	data reduction
SHELXL-97	refinement
PHASER	phasing
HKL-2000	data scaling

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2018-05-24 
• Released Date: 2018-10-17 
• Deposition Author(s): Wong-Sam, A.E., Wang, Y.F., Weber, I.T.

---

Funding Organization	Location	Grant Number
National Institutes of Health/National Human Genome Research Institute	United States	GM062920

Revision History 

• Version 1.0: 2018-10-17
  Type: Initial release