6DIY

YTFGQ segment from Human Immunoglobulin Light-Chain Variable Domain, Residues 96-100, assembled as an amyloid fibril


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.9 Å
  • R-Value Free: 0.120 
  • R-Value Work: 0.097 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Identification of two principal amyloid-driving segments in variable domains of Ig light chains in systemic light-chain amyloidosis.

Brumshtein, B.Esswein, S.R.Sawaya, M.R.Rosenberg, G.Ly, A.T.Landau, M.Eisenberg, D.S.

(2018) J. Biol. Chem. 293: 19659-19671


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
YTFGQ segment Light-Chain Variable Domain Kappa AL09
A
5N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.9 Å
  • R-Value Free: 0.120 
  • R-Value Work: 0.097 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 36.780α = 90.00
b = 4.810β = 104.95
c = 18.910γ = 90.00
Software Package:
Software NamePurpose
SHELXDphasing
XDSdata reduction
XSCALEdata scaling
PDB_EXTRACTdata extraction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute on AgingUnited States1R01AG048120-01
National Institutes of Health/National Institute of General Medical SciencesUnited StatesP41 GM103403

Revision History 

  • Version 1.0: 2018-10-31
    Type: Initial release
  • Version 1.1: 2018-11-07
    Type: Data collection, Database references
  • Version 1.2: 2019-01-02
    Type: Data collection, Database references