6DIN

High resolutionstructure of apo dTDP-4-dehydrorhamnose 3,5-epimerase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.176 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

High resolutionstructure of apo dTDP-4-dehydrorhamnose 3,5-epimerase

Chang, C.Jedrzejczak, R.Chhor, G.Joachimiak, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
dTDP-4-dehydrorhamnose 3,5-epimerase
A
184Pseudomonas aeruginosaMutation(s): 0 
Gene Names: rmlC (rfbC)
EC: 5.1.3.13
Find proteins for A0A0D6IV69 (Pseudomonas aeruginosa)
Go to UniProtKB:  A0A0D6IV69
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.176 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 58.854α = 90.00
b = 58.854β = 90.00
c = 160.908γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data reduction
PDB_EXTRACTdata extraction
HKL-3000phasing
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-05-30
    Type: Initial release