6DI0

CRYSTAL STRUCTURE OF BTK IN COMPLEX WITH FRAGMENT LIGAND


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.180 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Discovery of a novel series of pyridine and pyrimidine carboxamides as potent and selective covalent inhibitors of Btk.

Caldwell, R.Liu-Bujalski, L.Qiu, H.Mochalkin, I.Jones, R.Neagu, C.Goutopoulos, A.Grenningloh, R.Johnson, T.Sherer, B.Gardberg, A.Follis, A.V.Morandi, F.Head, J.

(2018) Bioorg. Med. Chem. Lett. 28: 3419-3424


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Tyrosine-protein kinase BTK
A
271Homo sapiensMutation(s): 0 
Gene Names: BTK (AGMX1, ATK, BPK)
EC: 2.7.10.2
Find proteins for Q06187 (Homo sapiens)
Go to Gene View: BTK
Go to UniProtKB:  Q06187
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GJG
Query on GJG

Download SDF File 
Download CCD File 
A
6-(cyclohexylamino)pyridine-3-carboxamide
C12 H17 N3 O
DGZXVZSOZVPFDW-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.180 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 72.042α = 90.00
b = 104.139β = 90.00
c = 38.065γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
REFMACrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-05-22 
  • Released Date: 2018-10-17 
  • Deposition Author(s): MOCHALKIN, I.

Revision History 

  • Version 1.0: 2018-10-17
    Type: Initial release
  • Version 1.1: 2018-10-24
    Type: Data collection, Database references