6DG8

Full-length 5-HT3A receptor in a serotonin-bound conformation- State 2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.89 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Cryo-EM reveals two distinct serotonin-bound conformations of full-length 5-HT3A receptor

Basak, S.Gicheru, Y.Rao, S.Sansom, M.S.P.Chakrapani, S.

(2018) Nature --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
5-hydroxytryptamine receptor 3A
A, B, C, D, E
455Mus musculusMutation(s): 0 
Gene Names: Htr3a
Find proteins for E9QLC0 (Mus musculus)
Go to UniProtKB:  E9QLC0
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SRO
Query on SRO

Download SDF File 
Download CCD File 
A, B, D, E
SEROTONIN
3-(2-AMINOETHYL)-1H-INDOL-5-OL
C10 H12 N2 O
QZAYGJVTTNCVMB-UHFFFAOYSA-N
 Ligand Interaction
BMA
Query on BMA

Download SDF File 
Download CCD File 
A, B, C, D, E
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C, D, E
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.89 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited States1R01GM108921
National Institutes of Health/National Institute of General Medical SciencesUnited States3R01GM108921-03S1
American Heart AssociationUnited States17POST33671152

Revision History 

  • Version 1.0: 2018-11-07
    Type: Initial release