6DFY

Remodeled crystal structure of DNA-bound DUX4-HD2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.623 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.246 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Comment on structural basis of DUX4/IGH-driven transactivation.

Aihara, H.Shi, K.Lee, J.K.Bosnakovski, D.Kyba, M.

(2018) Leukemia 32: 2090-2092


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Double homeobox protein 4
C, D
64Homo sapiensMutation(s): 0 
Gene Names: DUX4 (DUX10)
Find proteins for Q9UBX2 (Homo sapiens)
Go to Gene View: DUX4
Go to UniProtKB:  Q9UBX2
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*AP*AP*GP*AP*TP*TP*AP*GP*AP*TP*TP*AP*GP*T)-3')E14synthetic construct
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(*TP*TP*CP*TP*AP*AP*TP*CP*TP*AP*AP*TP*CP*A)-3')F14synthetic construct
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.623 Å
  • R-Value Free: 0.279 
  • R-Value Work: 0.246 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 51.610α = 90.00
b = 51.610β = 90.00
c = 166.550γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
PHENIXrefinement
PHENIXphasing
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-05-15 
  • Released Date: 2018-09-05 
  • Deposition Author(s): Aihara, H., Shi, K.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM103403

Revision History 

  • Version 1.0: 2018-09-05
    Type: Initial release
  • Version 1.1: 2018-09-19
    Type: Data collection, Database references