6DFM

Crystal structure of human GRP78 in complex with 8-aminoadenosine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.14 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.187 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of human GRP78 in complex with 8-aminoadenosine

Ferrie, R.P.Chen, Y.Antoshchenko, T.Cooney, O.M.Huang, Y.Park, H.W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Endoplasmic reticulum chaperone BiP
A, B
382Homo sapiensMutation(s): 0 
Gene Names: HSPA5 (GRP78)
EC: 3.6.4.10
Find proteins for P11021 (Homo sapiens)
Go to Gene View: HSPA5
Go to UniProtKB:  P11021
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
3BH
Query on 3BH

Download SDF File 
Download CCD File 
A, B
(2R,3R,4S,5R)-2-(6,8-diaminopurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol
8-aminoadenosine
C10 H14 N6 O4
DVGWFQILDUEEGX-UUOKFMHZSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.14 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.187 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 55.662α = 90.00
b = 74.775β = 99.48
c = 89.485γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
MOLREPphasing
BUSTERrefinement
XDSdata reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-05-15
    Type: Initial release