6DFL

WaaP in complex with acyl carrier protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.396 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.233 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

WaaP in complex with acyl carrier protein

Chopra, R.Vash, B.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lipopolysaccharide core heptose(I) kinase RfaP
A
259Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)Mutation(s): 0 
Gene Names: rfaP (waaP)
EC: 2.7.1.-, 2.7.10.2
Find proteins for Q9HUF7 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Go to UniProtKB:  Q9HUF7
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Acyl carrier protein
B
72Escherichia coli (strain K12)Mutation(s): 0 
Gene Names: acpP
Find proteins for P0A6A8 (Escherichia coli (strain K12))
Go to UniProtKB:  P0A6A8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
G9S
Query on G9S

Download SDF File 
Download CCD File 
B
S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] hexadecanethioate
C27 H53 N2 O8 P S
JSWBEHRITPIXLC-RUZDIDTESA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.396 Å
  • R-Value Free: 0.269 
  • R-Value Work: 0.233 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 92.023α = 90.00
b = 92.023β = 90.00
c = 99.172γ = 120.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
XDSdata reduction
Aimlessdata scaling
SHELXphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-05-15 
  • Released Date: 2019-04-03 
  • Deposition Author(s): Chopra, R., Vash, B.

Revision History 

  • Version 1.0: 2019-04-03
    Type: Initial release