6DFJ

Crystal structure of anti-Zika antibody Z021 bound to DENV-1 envelope protein DIII


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.184 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

A Combination of Two Human Monoclonal Antibodies Prevents Zika Virus Escape Mutations in Non-human Primates.

Keeffe, J.R.Van Rompay, K.K.A.Olsen, P.C.Wang, Q.Gazumyan, A.Azzopardi, S.A.Schaefer-Babajew, D.Lee, Y.E.Stuart, J.B.Singapuri, A.Watanabe, J.Usachenko, J.Ardeshir, A.Saeed, M.Agudelo, M.Eisenreich, T.Bournazos, S.Oliveira, T.Y.Rice, C.M.Coffey, L.L.MacDonald, M.R.Bjorkman, P.J.Nussenzweig, M.C.Robbiani, D.F.

(2018) Cell Rep 25: 1385-1394.e7


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
anti-Zika antibody Z021, Heavy Chain
H
230N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
anti-Zika antibody Z021, Light Chain
L
216N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Dengue 1 Envelope DIII domain
E
99Dengue virus 1Mutation(s): 0 
Gene Names: E
Find proteins for Q8BE58 (Dengue virus 1)
Go to UniProtKB:  Q8BE58
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.184 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 60.540α = 90.00
b = 91.600β = 90.00
c = 187.140γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
Aimlessdata scaling
MOSFLMdata reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-10-24
    Type: Initial release
  • Version 1.1: 2018-11-14
    Type: Data collection, Database references