6DCL

Crystal structure of UP1 bound to pri-miRNA-18a terminal loop


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.497 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis for terminal loop recognition and stimulation of pri-miRNA-18a processing by hnRNP A1.

Kooshapur, H.Choudhury, N.R.Simon, B.Muhlbauer, M.Jussupow, A.Fernandez, N.Jones, A.N.Dallmann, A.Gabel, F.Camilloni, C.Michlewski, G.Caceres, J.F.Sattler, M.

(2018) Nat Commun 9: 2479-2479


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Heterogeneous nuclear ribonucleoprotein A1
A, B
191Homo sapiensMutation(s): 0 
Gene Names: HNRNPA1 (HNRPA1)
Find proteins for P09651 (Homo sapiens)
Go to Gene View: HNRNPA1
Go to UniProtKB:  P09651
Entity ID: 2
MoleculeChainsLengthOrganism
RNA (5'-R(*AP*GP*UP*AP*GP*AP*UP*UP*AP*GP*C)-3')C,D12Homo sapiens
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.497 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.202 
  • Space Group: P 62 2 2
Unit Cell:
Length (Å)Angle (°)
a = 127.028α = 90.00
b = 127.028β = 90.00
c = 147.064γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanySFB1035
German Research FoundationGermanyGRK1721

Revision History 

  • Version 1.0: 2018-06-27
    Type: Initial release
  • Version 1.1: 2018-07-11
    Type: Data collection, Database references