6DC5

RSV prefusion F in complex with AM22 Fab


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.217 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

RSV prefusion F in complex with AM22 Fab

Jones, H.G.Battles, M.B.Lin, C.McLellan, J.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RSV fusion glycoprotein
A, D, G
568Human immunodeficiency virus 1Human respiratory syncytial virus A (strain A2)
This entity is chimeric
Mutation(s): 4 
Gene Names: F
Find proteins for M1E1E4 (Human immunodeficiency virus 1)
Go to UniProtKB:  M1E1E4
Find proteins for P03420 (Human respiratory syncytial virus A (strain A2))
Go to UniProtKB:  P03420
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Fab AM22 heavy chain
B, E, H
228N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Fab AM22 light chain
C, F, I
215N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PEG
Query on PEG

Download SDF File 
Download CCD File 
C, F, I
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, D, G
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
CD
Query on CD

Download SDF File 
Download CCD File 
A, D, G
CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.217 
  • Space Group: P 21 2 21
Unit Cell:
Length (Å)Angle (°)
a = 132.450α = 90.00
b = 152.180β = 90.00
c = 202.930γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
PHENIXrefinement
iMOSFLMdata reduction
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesP20GM113132

Revision History 

  • Version 1.0: 2019-07-10
    Type: Initial release