6DBS

Fusion surface structure, function, and dynamics of gamete fusogen HAP2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.602 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.237 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Fusion surface structure, function, and dynamics of gamete fusogen HAP2.

Feng, J.Dong, X.Pinello, J.Zhang, J.Lu, C.Iacob, R.E.Engen, J.R.Snell, W.J.Springer, T.A.

(2018) Elife 7: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hapless 2
A, C, B
565Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: HAP2 (GCS1)
Find proteins for A4GRC6 (Chlamydomonas reinhardtii)
Go to UniProtKB:  A4GRC6
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MAN
Query on MAN

Download SDF File 
Download CCD File 
B, C
ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
 Ligand Interaction
BMA
Query on BMA

Download SDF File 
Download CCD File 
A, B, C
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.602 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.237 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 198.220α = 90.00
b = 117.600β = 123.79
c = 115.210γ = 90.00
Software Package:
Software NamePurpose
Cootmodel building
XSCALEdata scaling
AutoSolphasing
PHENIXrefinement
XDSdata reduction
Blu-Icedata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Library of MedicineUnited StatesNIH grants R01-CA31798

Revision History 

  • Version 1.0: 2018-09-19
    Type: Initial release
  • Version 1.1: 2018-10-17
    Type: Data collection, Database references