6D9J

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.2 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Dual tRNA mimicry in the Cricket Paralysis Virus IRES uncovers an unexpected similarity with the Hepatitis C Virus IRES.

Pisareva, V.P.Pisarev, A.V.Fernandez, I.S.

(2018) Elife 7: --

  • DOI: 10.7554/eLife.34062
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Co-opting the cellular machinery for protein production is a compulsory requirement for viruses. The Cricket Paralysis Virus employs an Internal Ribosomal Entry Site (CrPV-IRES) to express its structural genes in the late stage of infection. Ribosome ...

    Co-opting the cellular machinery for protein production is a compulsory requirement for viruses. The Cricket Paralysis Virus employs an Internal Ribosomal Entry Site (CrPV-IRES) to express its structural genes in the late stage of infection. Ribosome hijacking is achieved by a sophisticated use of molecular mimicry to tRNA and mRNA, employed to manipulate intrinsically dynamic components of the ribosome. Binding and translocation through the ribosome is required for this IRES to initiate translation. We report two structures, solved by single particle electron cryo-microscopy (cryoEM), of a double translocated CrPV-IRES with aminoacyl-tRNA in the peptidyl site (P site) of the ribosome. CrPV-IRES adopts a previously unseen conformation, mimicking the acceptor stem of a canonical E site tRNA. The structures suggest a mechanism for the positioning of the first aminoacyl-tRNA shared with the distantly related Hepatitis C Virus IRES.


    Organizational Affiliation

    Department of Cell Biology, SUNY Downstate Medical Center, Brooklyn, United States.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
uL2
A
257Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL8
Find proteins for G1TT27 (Oryctolagus cuniculus)
Go to Gene View: RPL8
Go to UniProtKB:  G1TT27
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
uL3
B
403Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL3
Find proteins for G1TL06 (Oryctolagus cuniculus)
Go to Gene View: RPL3
Go to UniProtKB:  G1TL06
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
uL4
C
392Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL4
Find proteins for G1SVW5 (Oryctolagus cuniculus)
Go to Gene View: RPL4
Go to UniProtKB:  G1SVW5
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
uL18
D
297Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL5
Find proteins for G1SYJ6 (Oryctolagus cuniculus)
Go to Gene View: RPL5
Go to UniProtKB:  G1SYJ6
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
eL6
E
291Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL6
Find proteins for G1SKF7 (Oryctolagus cuniculus)
Go to Gene View: RPL6
Go to UniProtKB:  G1SKF7
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
uL30
F
249Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL7
Find proteins for G1SV32 (Oryctolagus cuniculus)
Go to Gene View: RPL7
Go to UniProtKB:  G1SV32
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
eL8
G
242Oryctolagus cuniculusMutation(s): 0 
Find proteins for G1STW0 (Oryctolagus cuniculus)
Go to UniProtKB:  G1STW0
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
uL6
H
192Oryctolagus cuniculusMutation(s): 0 
Find proteins for G1TX33 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TX33
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
uL16
I
214Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL10
Find proteins for B7NZQ2 (Oryctolagus cuniculus)
Go to Gene View: RPL10
Go to UniProtKB:  B7NZQ2
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
uL11
J
178Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL11
Find proteins for G1TUB8 (Oryctolagus cuniculus)
Go to Gene View: RPL11
Go to UniProtKB:  G1TUB8
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
eL13
L
211Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100342098
Find proteins for G1TPV0 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TPV0
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
eL14
M
198Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL14
Find proteins for U3KNW6 (Oryctolagus cuniculus)
Go to Gene View: RPL14
Go to UniProtKB:  U3KNW6
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
eL15
N
204Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL15 (LOC100358370)
Find proteins for G1T0C1 (Oryctolagus cuniculus)
Go to Gene View: RPL15
Go to UniProtKB:  G1T0C1
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
uL13
O
198N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
uL22
P
187Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC108175352
Find proteins for G1TVT6 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TVT6
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
eL18
Q
187N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
eL19
R
181N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
eL20
S
176N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
eL21
T
160Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL21
Find proteins for G1SHQ2 (Oryctolagus cuniculus)
Go to Gene View: RPL21
Go to UniProtKB:  G1SHQ2
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
eL22
U
99N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
uL14
V
140Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL23
Find proteins for G1T6D1 (Oryctolagus cuniculus)
Go to Gene View: RPL23
Go to UniProtKB:  G1T6D1
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
eL24
W
157Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL24
Find proteins for G1SE28 (Oryctolagus cuniculus)
Go to Gene View: RPL24
Go to UniProtKB:  G1SE28
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
eL23
X
156Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC108177184 (LOC108177974)
Find proteins for G1SE76 (Oryctolagus cuniculus)
Go to UniProtKB:  G1SE76
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
uL24
Y
145Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL26
Find proteins for G1SQH0 (Oryctolagus cuniculus)
Go to Gene View: RPL26
Go to UniProtKB:  G1SQH0
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
eL27
Z
136Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100356974 (RPL27)
Find proteins for G1TXF6 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TXF6
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
uL15
a
148Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL27A
Find proteins for G1SNY0 (Oryctolagus cuniculus)
Go to Gene View: RPL27A
Go to UniProtKB:  G1SNY0
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
eL29
b
226Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL29
Find proteins for G1SGR6 (Oryctolagus cuniculus)
Go to Gene View: RPL29
Go to UniProtKB:  G1SGR6
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
eL30
c
115Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL30
Find proteins for G1TDL2 (Oryctolagus cuniculus)
Go to Gene View: RPL30
Go to UniProtKB:  G1TDL2
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
eL31
d
125Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL31
Find proteins for G1SHG0 (Oryctolagus cuniculus)
Go to Gene View: RPL31
Go to UniProtKB:  G1SHG0
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
eL32
e
135Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL32
Find proteins for G1U437 (Oryctolagus cuniculus)
Go to Gene View: RPL32
Go to UniProtKB:  G1U437
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
eL33
f
110Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL35A
Find proteins for G1SF08 (Oryctolagus cuniculus)
Go to Gene View: RPL35A
Go to UniProtKB:  G1SF08
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
eL34
g
126Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100354714
Find proteins for G1U945 (Oryctolagus cuniculus)
Go to UniProtKB:  G1U945
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
eL35
h
123Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL35
Find proteins for G1SIT5 (Oryctolagus cuniculus)
Go to Gene View: RPL35
Go to UniProtKB:  G1SIT5
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
eL36
i
105Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100348796
Find proteins for G1TTQ5 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TTQ5
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
eL37
j
97Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL37
Find proteins for U3KPD5 (Oryctolagus cuniculus)
Go to Gene View: RPL37
Go to UniProtKB:  U3KPD5
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
eL38
k
69N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
eL39
l
51Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100343258
Find proteins for G1TTN1 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TTN1
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
eL40
m
52N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
eL41
n
25N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
eL42
o
106Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100358069 (LOC100342087, LOC100350675, RPL36AL)
Find proteins for G1U344 (Oryctolagus cuniculus)
Go to UniProtKB:  G1U344
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
eL43
p
92Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100351807
Find proteins for G1SY53 (Oryctolagus cuniculus)
Go to UniProtKB:  G1SY53
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
eL28
r
137Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100358162
Find proteins for G1U7L1 (Oryctolagus cuniculus)
Go to UniProtKB:  G1U7L1
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
uL10
s
303Oryctolagus cuniculusMutation(s): 0 
Find proteins for G1U6N2 (Oryctolagus cuniculus)
Go to UniProtKB:  G1U6N2
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
uL11
t
195Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL12
Find proteins for G1SMR7 (Oryctolagus cuniculus)
Go to Gene View: RPL12
Go to UniProtKB:  G1SMR7
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
uL1
K
217Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPL10A
Find proteins for G1SKZ8 (Oryctolagus cuniculus)
Go to Gene View: RPL10A
Go to UniProtKB:  G1SKZ8
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
uS2
BB
217N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
eS1
CC
264Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS3A (LOC100342838, LOC100348981)
Find proteins for G1SS70 (Oryctolagus cuniculus)
Go to Gene View: RPS3A
Go to UniProtKB:  G1SS70
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
uS5
DD
221N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
uS3
EE
281Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS3
Find proteins for G1TNM3 (Oryctolagus cuniculus)
Go to Gene View: RPS3
Go to UniProtKB:  G1TNM3
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetails
eS4
FF
262N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 55
MoleculeChainsSequence LengthOrganismDetails
uS7
GG
204Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS5
Find proteins for G1TFM5 (Oryctolagus cuniculus)
Go to Gene View: RPS5
Go to UniProtKB:  G1TFM5
Entity ID: 56
MoleculeChainsSequence LengthOrganismDetails
eS6
HH
249Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100339133 (RPS6)
Find proteins for G1TM55 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TM55
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
eS7
II
194Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS7
Find proteins for G1SVB0 (Oryctolagus cuniculus)
Go to Gene View: RPS7
Go to UniProtKB:  G1SVB0
Entity ID: 58
MoleculeChainsSequence LengthOrganismDetails
eS8
JJ
206Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100352057
Find proteins for G1TJW1 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TJW1
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetails
uS4
KK
194Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS9
Find proteins for B7NZS8 (Oryctolagus cuniculus)
Go to Gene View: RPS9
Go to UniProtKB:  B7NZS8
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetails
eS10
LL
149Oryctolagus cuniculusMutation(s): 0 
Find proteins for G1U0Y5 (Oryctolagus cuniculus)
Go to UniProtKB:  G1U0Y5
Entity ID: 61
MoleculeChainsSequence LengthOrganismDetails
uS17
MM
158Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100347468
Find proteins for G1TRM4 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TRM4
Entity ID: 62
MoleculeChainsSequence LengthOrganismDetails
eS12
NN
132Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS12
Find proteins for G1SFR8 (Oryctolagus cuniculus)
Go to Gene View: RPS12
Go to UniProtKB:  G1SFR8
Entity ID: 63
MoleculeChainsSequence LengthOrganismDetails
uS15
OO
151Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS13
Find proteins for G1SP51 (Oryctolagus cuniculus)
Go to Gene View: RPS13
Go to UniProtKB:  G1SP51
Entity ID: 64
MoleculeChainsSequence LengthOrganismDetails
uS11
PP
151Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100337691 (LOC100351184)
Find proteins for G1U472 (Oryctolagus cuniculus)
Go to UniProtKB:  G1U472
Entity ID: 65
MoleculeChainsSequence LengthOrganismDetails
uS19
QQ
145Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC103349305
Find proteins for G1U0Q2 (Oryctolagus cuniculus)
Go to UniProtKB:  G1U0Q2
Entity ID: 66
MoleculeChainsSequence LengthOrganismDetails
uS9
RR
172Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS16
Find proteins for G1SGX4 (Oryctolagus cuniculus)
Go to Gene View: RPS16
Go to UniProtKB:  G1SGX4
Entity ID: 67
MoleculeChainsSequence LengthOrganismDetails
eS17
SS
135Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS17
Find proteins for G1TU13 (Oryctolagus cuniculus)
Go to Gene View: RPS17
Go to UniProtKB:  G1TU13
Entity ID: 68
MoleculeChainsSequence LengthOrganismDetails
uS13
TT
152Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100356144
Find proteins for G1TPG3 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TPG3
Entity ID: 69
MoleculeChainsSequence LengthOrganismDetails
eS19
UU
145Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100345774
Find proteins for G1TN62 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TN62
Entity ID: 70
MoleculeChainsSequence LengthOrganismDetails
uS10
VV
119Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100341365
Find proteins for G1SIZ2 (Oryctolagus cuniculus)
Go to UniProtKB:  G1SIZ2
Entity ID: 71
MoleculeChainsSequence LengthOrganismDetails
eS21
WW
83N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 72
MoleculeChainsSequence LengthOrganismDetails
uS8
XX
130Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS15A
Find proteins for G1TG89 (Oryctolagus cuniculus)
Go to Gene View: RPS15A
Go to UniProtKB:  G1TG89
Entity ID: 73
MoleculeChainsSequence LengthOrganismDetails
uS12
YY
143Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS23
Find proteins for G1SZ47 (Oryctolagus cuniculus)
Go to Gene View: RPS23
Go to UniProtKB:  G1SZ47
Entity ID: 74
MoleculeChainsSequence LengthOrganismDetails
eS24
ZZ
134Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS24
Find proteins for G1T3D8 (Oryctolagus cuniculus)
Go to Gene View: RPS24
Go to UniProtKB:  G1T3D8
Entity ID: 75
MoleculeChainsSequence LengthOrganismDetails
eS25
aa
125Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS25
Find proteins for G1TDB3 (Oryctolagus cuniculus)
Go to Gene View: RPS25
Go to UniProtKB:  G1TDB3
Entity ID: 76
MoleculeChainsSequence LengthOrganismDetails
eS26
bb
101N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 77
MoleculeChainsSequence LengthOrganismDetails
eS27
cc
84Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100345694 (LOC100345044, LOC100348261, RPS27)
Find proteins for G1TZ76 (Oryctolagus cuniculus)
Go to UniProtKB:  G1TZ76
Entity ID: 78
MoleculeChainsSequence LengthOrganismDetails
eS28
dd
69Oryctolagus cuniculusMutation(s): 0 
Gene Names: RPS28
Find proteins for G1TIB4 (Oryctolagus cuniculus)
Go to Gene View: RPS28
Go to UniProtKB:  G1TIB4
Entity ID: 79
MoleculeChainsSequence LengthOrganismDetails
eS29
ee
56N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 80
MoleculeChainsSequence LengthOrganismDetails
eS30
ff
133Oryctolagus cuniculusMutation(s): 0 
Gene Names: FAU
Find proteins for G1T8A2 (Oryctolagus cuniculus)
Go to Gene View: FAU
Go to UniProtKB:  G1T8A2
Entity ID: 81
MoleculeChainsSequence LengthOrganismDetails
eS31
gg
156Oryctolagus cuniculusMutation(s): 0 
Gene Names: LOC100348379
Find proteins for G1SK22 (Oryctolagus cuniculus)
Go to UniProtKB:  G1SK22
Entity ID: 82
MoleculeChainsSequence LengthOrganismDetails
RACK1
hh
317Oryctolagus cuniculusMutation(s): 0 
Gene Names: RACK1
Find proteins for G1SJB4 (Oryctolagus cuniculus)
Go to Gene View: RACK1
Go to UniProtKB:  G1SJB4
Entity ID: 84
MoleculeChainsSequence LengthOrganismDetails
eEF2
9
856Homo sapiensMutation(s): 0 
Gene Names: EEF2 (EF2)
Find proteins for P13639 (Homo sapiens)
Go to Gene View: EEF2
Go to UniProtKB:  P13639
Entity ID: 45
MoleculeChainsLengthOrganism
28S rRNA53594Oryctolagus cuniculus
Entity ID: 46
MoleculeChainsLengthOrganism
5S rRNA7119Oryctolagus cuniculus
Entity ID: 47
MoleculeChainsLengthOrganism
5.8S rRNA8151Oryctolagus cuniculus
Entity ID: 49
MoleculeChainsLengthOrganism
18S rRNA21697Oryctolagus cuniculus
Entity ID: 83
MoleculeChainsLengthOrganism
P-site tRNA387Escherichia coli
Entity ID: 85
MoleculeChainsLengthOrganism
CrPV IRES4190Cricket paralysis virus
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
2, bb, gg, p
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
5
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.2 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited StatesGM097014

Revision History 

  • Version 1.0: 2018-06-06
    Type: Initial release
  • Version 1.1: 2018-06-13
    Type: Data collection, Database references