6D7G

Structure of 5F3 TCR in complex with HLA-A2/MART-1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.211 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Generation and molecular recognition of melanoma-associated antigen-specific human gamma delta T cells.

Benveniste, P.M.Roy, S.Nakatsugawa, M.Chen, E.L.Y.Nguyen, L.Millar, D.G.Ohashi, P.S.Hirano, N.Adams, E.J.Zuniga-Pflucker, J.C.

(2018) Sci Immunol 3: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
MART1 PEPTIDE-BETA-2-MICROGLOBULIN-HLA-A*02 CHIMERA
A
427Homo sapiensMutation(s): 0 
Gene Names: HLA-A (HLAA), B2M
Find proteins for P01892 (Homo sapiens)
Go to Gene View: HLA-A
Go to UniProtKB:  P01892
Find proteins for P61769 (Homo sapiens)
Go to Gene View: B2M
Go to UniProtKB:  P61769
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
TRA@ protein
D
229Homo sapiensMutation(s): 0 
Gene Names: TRA@
Find proteins for Q6PJ56 (Homo sapiens)
Go to UniProtKB:  Q6PJ56
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
T-CELL RECEPTOR GAMMA VARIABLE 8,T-CELL RECEPTOR GAMMA-2 CHAIN C REGION
E
258N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download SDF File 
Download CCD File 
D
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.211 
  • Space Group: P 62
Unit Cell:
Length (Å)Angle (°)
a = 123.953α = 90.00
b = 123.953β = 90.00
c = 154.156γ = 120.00
Software Package:
Software NamePurpose
DENZOdata reduction
PHASERphasing
HKL-2000data scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-04-24 
  • Released Date: 2019-01-23 
  • Deposition Author(s): Roy, S., Adams, E.J.

Revision History 

  • Version 1.0: 2019-01-23
    Type: Initial release