6D7C

The crystal structure of hemagglutinin from A/Hong Kong/61/2016 H7N9 influenza virus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.236 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural and Molecular Characterization of the Hemagglutinin from the Fifth-Epidemic-Wave A(H7N9) Influenza Viruses.

Yang, H.Carney, P.J.Chang, J.C.Guo, Z.Stevens, J.

(2018) J. Virol. 92: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hemagglutinin HA1 chain
A, C, E, G, I, K
321Influenza A virusMutation(s): 0 
Gene Names: HA
Find proteins for A0A0C4ZYE2 (Influenza A virus)
Go to UniProtKB:  A0A0C4ZYE2
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Hemagglutinin HA2 chain
B, D, F, H, J, L
221Influenza A virusMutation(s): 0 
Gene Names: HA
Find proteins for S4V1Z7 (Influenza A virus)
Go to UniProtKB:  S4V1Z7
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C, E, F, G, H, I, J, L
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.236 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 210.014α = 90.00
b = 97.527β = 108.58
c = 191.809γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-04-24 
  • Released Date: 2018-05-30 
  • Deposition Author(s): Yang, H., Stevens, J.

Revision History 

  • Version 1.0: 2018-05-30
    Type: Initial release
  • Version 1.1: 2018-06-13
    Type: Data collection, Database references
  • Version 1.2: 2019-04-03
    Type: Data collection, Database references