6D71

Crystal Structure of the Human Miro1 N-terminal GTPase bound to GTP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.184 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural assembly of the human Miro1/2 GTPases based on the crystal structure of the N-terminal GTPase domain

Smith, K.P.Focia, P.J.Chakravarthy, S.Landahl, E.C.Klosowiak, J.L.Rice, S.E.Freymann, D.M.

(2019) Biorxiv 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Mitochondrial Rho GTPase 1 AB186Homo sapiensMutation(s): 0 
Gene Names: RHOT1ARHT1
EC: 3.6.5
Find proteins for Q8IXI2 (Homo sapiens)
Explore Q8IXI2 
Go to UniProtKB:  Q8IXI2
NIH Common Fund Data Resources
PHAROS:  Q8IXI2
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GTP
Query on GTP

Download Ideal Coordinates CCD File 
A, B
GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.182 
  • R-Value Observed: 0.184 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 41.35α = 90
b = 78.27β = 90
c = 99.78γ = 90
Software Package:
Software NamePurpose
MOSFLMdata reduction
Aimlessdata scaling
PHENIXphasing
PHENIXrefinement

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United StatesR01GM107209
National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)United StatesT32GM008382
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesNCI-CCSG-P30-CA060553

Revision History  (Full details and data files)

  • Version 1.0: 2019-10-09
    Type: Initial release
  • Version 1.1: 2019-12-04
    Changes: Author supporting evidence