6D5C

Structure of Caldicellulosiruptor danielii GH10 module of glycoside hydrolase WP_045175321


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.181 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Novel multidomain, multifunctional glycoside hydrolases from highly lignocellulolytic Caldicellulosiruptor species

Conway, J.M.Crosby, J.R.Hren, A.P.Southerland, R.T.Lee, L.L.Lunin, V.V.Alahuhta, P.M.Himmel, M.E.Bomble, Y.J.Adams, M.W.W.Kelly, R.M.

(2019) Aiche J 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
glycoside hydrolase WP_045175321A, B, C350Caldicellulosiruptor danieliiMutation(s): 0 
EC: 3.2.1 (PDB Primary Data), 3.2.1.8 (UniProt)
UniProt
Find proteins for A0A4V8GZQ8 (Caldicellulosiruptor danielii)
Explore A0A4V8GZQ8 
Go to UniProtKB:  A0A4V8GZQ8
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
CA [auth C] , D [auth A] , DA [auth C] , E [auth A] , EA [auth C] , F [auth A] , FA [auth C] , G [auth A] , 
CA [auth C],  D [auth A],  DA [auth C],  E [auth A],  EA [auth C],  F [auth A],  FA [auth C],  G [auth A],  GA [auth C],  H [auth A],  HA [auth C],  I [auth A],  P [auth B],  Q [auth B],  R [auth B],  S [auth B],  T [auth B],  U [auth B],  V [auth B]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
AA [auth B], BA [auth B], M [auth A], N [auth A], Z [auth B]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
IA [auth C], J [auth A], K [auth A], L [auth A], W [auth B], X [auth B], Y [auth B]1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
FMT
Query on FMT

Download Ideal Coordinates CCD File 
O [auth A]FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.233 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.181 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 173.307α = 90
b = 98.497β = 93.58
c = 78.81γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
SAINTdata reduction
PROTEUM PLUSdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Energy (DOE, United States)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2019-04-24
    Type: Initial release
  • Version 1.1: 2019-06-05
    Changes: Data collection, Database references
  • Version 1.2: 2019-12-04
    Changes: Author supporting evidence