6D2Z

Structure of human Usb1 with uridine-adenosine, inactive H208Q mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.18 Å
  • R-Value Free: 0.174 
  • R-Value Work: 0.145 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural basis for preferential deadenylation of U6 RNA by Usb1

Nomura, Y.Montemayor, E.J.Butcher, S.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
U6 snRNA phosphodiesterase
A
191Homo sapiensMutation(s): 1 
Gene Names: USB1 (C16orf57)
EC: 3.1.4.-
Find proteins for Q9BQ65 (Homo sapiens)
Go to Gene View: USB1
Go to UniProtKB:  Q9BQ65
Entity ID: 2
MoleculeChainsLengthOrganism
5'-R(UP*A)-3')C2synthetic construct
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.18 Å
  • R-Value Free: 0.174 
  • R-Value Work: 0.145 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 41.393α = 90.00
b = 51.045β = 105.88
c = 46.299γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata scaling
Aimlessdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited StatesR01 GM065166
National Institutes of Health/National Human Genome Research InstituteUnited StatesR35 GM118131

Revision History 

  • Version 1.0: 2018-09-05
    Type: Initial release