6D2U

Solution structure of a ultra-high affinity macrocycle bound to HIV-1 TAR RNA


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

An ultra-high affinity ligand of HIV-1 TAR reveals the RNA structure recognized by P-TEFb.

Shortridge, M.D.Wille, P.T.Jones, A.N.Davidson, A.Bogdanovic, J.Arts, E.Karn, J.Robinson, J.A.Varani, G.

(2018) Nucleic Acids Res. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DAB-VAL-ARG-THR-ARG-LYS-GLY-ARG-ARG-ILE-NOR-ILE-DPR-PRO
A
14N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsLengthOrganism
RNA (29-MER)B29synthetic construct
Small Molecules
Modified Residues  3 Unique
IDChainsTypeFormula2D DiagramParent
DPR
Query on DPR
A
D-PEPTIDE LINKINGC5 H9 N O2

--

4J5
Query on 4J5
A
L-PEPTIDE LINKINGC5 H13 N4 O2ARG
DAB
Query on DAB
A
L-PEPTIDE LINKINGC4 H10 N2 O2ALA
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited States5R01GM110569

Revision History 

  • Version 1.0: 2018-12-12
    Type: Initial release