6CYP | pdb_00006cyp

Crystal structure analysis of the H75I mutant of Superoxide Dismutase from Trichoderma reesei

• PDB DOI: https://doi.org/10.2210/pdb6CYP/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Trichoderma reesei QM6a
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2018-04-06 Released: 2018-10-10 
• Deposition Author(s): Mendoza Rengifo, E., Ferreira Jr., J.R.S., Garratt, R.C.
• Funding Organization(s): Sao Paulo Research Foundation (FAPESP)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.189 (Depositor), 0.190 (DCC) 
• R-Value Work: 
  0.159 (Depositor), 0.160 (DCC) 
• R-Value Observed: 
  0.160 (Depositor) 

Literature

Crystal Structure of Mn Superoxide Dismutase double mutant (G74Q+Q149G) from Trichoderma reesei

Mendoza Rengifo, E., Garratt, R.C., Ferreira Jr., J.R.S.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 138.96 kDa 
• Atom Count: 10,955 
• Modeled Residue Count: 1,266 
• Deposited Residue Count: 1,266 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Superoxide dismutase	A, B, C, D, E, F	211	Trichoderma reesei QM6a	Mutation(s): 1  Gene Names: TRIREDRAFT_66345 EC: 1.15.1.1
UniProt
Find proteins for G0RQS7 (Hypocrea jecorina (strain QM6a)) Explore G0RQS7  Go to UniProtKB:  G0RQS7

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FE (Subject of Investigation/LOI)	G [auth A], H [auth B], I [auth C], J [auth D], K [auth E], L [auth F]	FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.189 (Depositor), 0.190 (DCC) 
• R-Value Work:  0.159 (Depositor), 0.160 (DCC) 
• R-Value Observed: 0.160 (Depositor) 

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.43	α = 90
b = 75.13	β = 90
c = 241.78	γ = 90

Software Package:

Software Name	Purpose
SCALA	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
iMOSFLM	data reduction
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2018-10-10 
Deposition Author(s): Mendoza Rengifo, E., Ferreira Jr., J.R.S., Garratt, R.C.

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Funding Organization	Location	Grant Number
Sao Paulo Research Foundation (FAPESP)	Brazil	2014/01855-2

Revision History  

• Version 1.0: 2018-10-10
  Type: Initial release
  
• Version 1.1: 2020-01-01
  Changes: Author supporting evidence, Structure summary
• Version 1.2: 2024-03-13
  Changes: Data collection, Database references, Derived calculations, Refinement description