6CY0

RNA octamer containing 2'-F, 4'-Cbeta-OMe U.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.398 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis for the synergy of 4'- and 2'-modifications on siRNA nuclease resistance, thermal stability and RNAi activity.

Harp, J.M.Guenther, D.C.Bisbe, A.Perkins, L.Matsuda, S.Bommineni, G.R.Zlatev, I.Foster, D.J.Taneja, N.Charisse, K.Maier, M.A.Rajeev, K.G.Manoharan, M.Egli, M.

(2018) Nucleic Acids Res. 46: 8090-8104


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
RNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')A,B,C,D,E,F,G,H8synthetic construct
Small Molecules
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
UFB
Query on UFB
A, B, C, D, E, F, G, H
RNA linkingC10 H14 F N2 O9 P

--

CBV
Query on CBV
A, B, C, D, E, F, G, H
RNA LINKINGC9 H13 Br N3 O8 PC
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.398 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.202 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 47.012α = 90.00
b = 47.631β = 90.00
c = 100.744γ = 90.00
Software Package:
Software NamePurpose
xia2data scaling
SHELXDEphasing
xia2data reduction
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-04-04 
  • Released Date: 2018-08-29 
  • Deposition Author(s): Harp, J.M., Egli, M.

Revision History 

  • Version 1.0: 2018-08-29
    Type: Initial release
  • Version 1.1: 2018-10-03
    Type: Data collection, Database references