6CXH

Crystal structure of particulate methane monooxygenase from Methylomicrobium alcaliphilum 20Z


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.704 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.213 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

From micelles to bicelles: Effect of the membrane on particulate methane monooxygenase activity.

Ro, S.Y.Ross, M.O.Deng, Y.W.Batelu, S.Lawton, T.J.Hurley, J.D.Stemmler, T.L.Hoffman, B.M.Rosenzweig, A.C.

(2018) J. Biol. Chem. 293: 10457-10465


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Particulate methane monooxygenase, B subunit
A
414Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z)Mutation(s): 0 
Gene Names: pmoB
EC: 1.14.13.25
Find proteins for G4SZ64 (Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z))
Go to UniProtKB:  G4SZ64
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Particulate methane monooxygenase, A subunit
B
247Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z)Mutation(s): 0 
Gene Names: pmoA
EC: 1.14.13.25
Find proteins for G4SZ63 (Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z))
Go to UniProtKB:  G4SZ63
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Particulate methane monooxygenase, C subunit
C
250Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z)Mutation(s): 0 
Gene Names: pmoC
EC: 1.14.13.25
Find proteins for G4SZ62 (Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z))
Go to UniProtKB:  G4SZ62
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CM5
Query on CM5

Download SDF File 
Download CCD File 
A, C
5-CYCLOHEXYL-1-PENTYL-BETA-D-MALTOSIDE
5-CYCLOHEXYLPENTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE; CYMAL-5
C23 H42 O11
RVTGFZGNOSKUDA-ZNGNCRBCSA-N
 Ligand Interaction
CU
Query on CU

Download SDF File 
Download CCD File 
A
COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.704 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.213 
  • Space Group: P 63
Unit Cell:
Length (Å)Angle (°)
a = 143.840α = 90.00
b = 143.840β = 90.00
c = 146.152γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited StatesGM118035
National Institutes of Health/National Human Genome Research InstituteUnited States5T32GM008382

Revision History 

  • Version 1.0: 2018-05-16
    Type: Initial release
  • Version 1.1: 2018-05-23
    Type: Data collection, Database references
  • Version 1.2: 2018-07-18
    Type: Data collection, Database references