6CXD

Crystal structure of peptidase B from Yersinia pestis CO92 at 2.75 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.178 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of peptidase B from Yersinia pestis CO92 at 2.75 A resolution

Woinska, M.Lipowska, J.Shabalin, I.G.Cymborowski, M.Grimshaw, S.Winsor, J.Shuvalova, L.Satchell, K.J.Joachimiak, A.Minor, W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peptidase B
A
456Yersinia pestisMutation(s): 0 
Gene Names: pepB
EC: 3.4.11.23
Find proteins for P58475 (Yersinia pestis)
Go to UniProtKB:  P58475
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 101.558α = 90.00
b = 101.558β = 90.00
c = 240.475γ = 120.00
Software Package:
Software NamePurpose
HKL-3000data scaling
SCALEPACKdata scaling
DENZOdata reduction
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000phasing
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited States--

Revision History 

  • Version 1.0: 2018-04-18
    Type: Initial release