6CX1

Cryo-EM structure of Seneca Valley Virus-Anthrax Toxin Receptor 1 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.8 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Structural basis for anthrax toxin receptor 1 recognition by Seneca Valley Virus.

Jayawardena, N.Burga, L.N.Easingwood, R.A.Takizawa, Y.Wolf, M.Bostina, M.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: E10934-E10940


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Anthrax toxin receptor 1
E
182Homo sapiensMutation(s): 0 
Gene Names: ANTXR1 (ATR, TEM8)
Find proteins for Q9H6X2 (Homo sapiens)
Go to Gene View: ANTXR1
Go to UniProtKB:  Q9H6X2
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Capsid protein VP1
A
258Senecavirus AMutation(s): 0 
Find proteins for A0A1U9IRU2 (Senecavirus A)
Go to UniProtKB:  A0A1U9IRU2
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Capsid protein VP2
C
268Senecavirus AMutation(s): 0 
Find proteins for A0A1U9IRU2 (Senecavirus A)
Go to UniProtKB:  A0A1U9IRU2
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Capsid protein VP3
B
238Senecavirus AMutation(s): 0 
Find proteins for A0A1U9IRU2 (Senecavirus A)
Go to UniProtKB:  A0A1U9IRU2
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
Capsid protein VP4
D
58Senecavirus AMutation(s): 0 
Find proteins for A0A218L148 (Senecavirus A)
Go to UniProtKB:  A0A218L148
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.8 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-10-31
    Type: Initial release
  • Version 1.1: 2018-11-14
    Type: Data collection, Derived calculations
  • Version 1.2: 2018-11-21
    Type: Data collection, Database references
  • Version 1.3: 2018-11-28
    Type: Data collection, Database references