6CWZ

Crystal structure of apo SUMO E1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Molecular mechanism of a covalent allosteric inhibitor of SUMO E1 activating enzyme.

Lv, Z.Yuan, L.Atkison, J.H.Williams, K.M.Vega, R.Sessions, E.H.Divlianska, D.B.Davies, C.Chen, Y.Olsen, S.K.

(2018) Nat Commun 9: 5145-5145


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
SUMO-activating enzyme subunit 1
C
346Homo sapiensMutation(s): 0 
Gene Names: SAE1 (AOS1, SUA1, UBLE1A)
Find proteins for Q9UBE0 (Homo sapiens)
Go to Gene View: SAE1
Go to UniProtKB:  Q9UBE0
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
SUMO-activating enzyme subunit 2
D
660Homo sapiensMutation(s): 0 
Gene Names: UBA2 (SAE2, UBLE1B)
EC: 2.3.2.-
Find proteins for Q9UBT2 (Homo sapiens)
Go to Gene View: UBA2
Go to UniProtKB:  Q9UBT2
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
D
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.225 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 56.139α = 90.00
b = 115.378β = 90.00
c = 172.973γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
HKL-2000data reduction
PHENIXrefinement
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM115568-02

Revision History 

  • Version 1.0: 2019-01-16
    Type: Initial release