6CS3

CryoEM structure of human enterovirus D68 expanded 1 particle (pH 7.2 and 4 degrees Celsius)

  • Classification: VIRUS
  • Organism(s): Enterovirus D68

  • Deposited: 2018-03-19 Released: 2018-12-19 
  • Deposition Author(s): Liu, Y., Rossmann, M.G.
  • Funding Organization(s): National Institutes of Health/National Human Genome Research Institute 

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.31 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Molecular basis for the acid-initiated uncoating of human enterovirus D68.

Liu, Y.Sheng, J.van Vliet, A.L.W.Buda, G.van Kuppeveld, F.J.M.Rossmann, M.G.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: E12209-E12217


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
viral protein 1
A
297Enterovirus D68Mutation(s): 0 
Find proteins for A0A097BW12 (Enterovirus D68)
Go to UniProtKB:  A0A097BW12
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
viral protein 3
B
247Enterovirus D68Mutation(s): 0 
Find proteins for A0A097BW12 (Enterovirus D68)
Go to UniProtKB:  A0A097BW12
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
viral protein 2
C
248Enterovirus D68Mutation(s): 0 
Find proteins for A0A1I9KXX3 (Enterovirus D68)
Go to UniProtKB:  A0A1I9KXX3
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
viral protein 4
D
68Enterovirus D68Mutation(s): 0 
Gene Names: POL
Find proteins for A0A191Z5D5 (Enterovirus D68)
Go to UniProtKB:  A0A191Z5D5
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.31 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
PHENIXrefinement
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Human Genome Research InstituteUnited StatesAI011219

Revision History 

  • Version 1.0: 2018-12-19
    Type: Initial release
  • Version 1.1: 2018-12-26
    Type: Data collection, Database references
  • Version 1.2: 2019-01-09
    Type: Data collection, Database references